miRNA display CGI


Results 1 - 20 of 308 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 170683 0.69 0.712278
Target:  5'- cAGGGGCGccCCGGGGACCGuCgCGGgggcaCCg -3'
miRNA:   3'- -UCCUCGUa-GGUUCCUGGU-GgGCCa----GG- -5'
29150 3' -57.8 NC_006146.1 + 170484 0.67 0.79625
Target:  5'- gAGGGGCGagCgGGGGGCUucCCCGGaCCc -3'
miRNA:   3'- -UCCUCGUa-GgUUCCUGGu-GGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 169744 0.71 0.613016
Target:  5'- gGGGAGC--CCcGGGGCgGCCCGGggacCCu -3'
miRNA:   3'- -UCCUCGuaGGuUCCUGgUGGGCCa---GG- -5'
29150 3' -57.8 NC_006146.1 + 169553 0.68 0.787373
Target:  5'- gAGGGGCGagCgGGGGGCUucCCCGGggcCCg -3'
miRNA:   3'- -UCCUCGUa-GgUUCCUGGu-GGGCCa--GG- -5'
29150 3' -57.8 NC_006146.1 + 168812 0.71 0.613016
Target:  5'- gGGGAGC--CCcGGGGCgGCCCGGggacCCu -3'
miRNA:   3'- -UCCUCGuaGGuUCCUGgUGGGCCa---GG- -5'
29150 3' -57.8 NC_006146.1 + 168621 0.68 0.787373
Target:  5'- gAGGGGCGagCgGGGGGCUucCCCGGggcCCg -3'
miRNA:   3'- -UCCUCGUa-GgUUCCUGGu-GGGCCa--GG- -5'
29150 3' -57.8 NC_006146.1 + 167880 0.71 0.613016
Target:  5'- gGGGAGC--CCcGGGGCgGCCCGGggacCCu -3'
miRNA:   3'- -UCCUCGuaGGuUCCUGgUGGGCCa---GG- -5'
29150 3' -57.8 NC_006146.1 + 167688 0.68 0.787373
Target:  5'- gAGGGGCGagCgGGGGGCUucCCCGGggcCCg -3'
miRNA:   3'- -UCCUCGUa-GgUUCCUGGu-GGGCCa--GG- -5'
29150 3' -57.8 NC_006146.1 + 167629 0.66 0.856276
Target:  5'- gGGGGGgGUCCcgcGGGGCCcggcgcgugccggggGCCCGGgggcgugUCCc -3'
miRNA:   3'- -UCCUCgUAGGu--UCCUGG---------------UGGGCC-------AGG- -5'
29150 3' -57.8 NC_006146.1 + 165816 0.69 0.702508
Target:  5'- gGGGGGCGUCCcuGG-CCGCgUGGacgccUCCa -3'
miRNA:   3'- -UCCUCGUAGGuuCCuGGUGgGCC-----AGG- -5'
29150 3' -57.8 NC_006146.1 + 164406 1.11 0.001689
Target:  5'- cAGGAGCAUCCAAGGACCACCCGGUCCu -3'
miRNA:   3'- -UCCUCGUAGGUUCCUGGUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 158440 0.71 0.623004
Target:  5'- gAGGGGC--CCGAGGGCCugaaaggcCCCGGcgCCu -3'
miRNA:   3'- -UCCUCGuaGGUUCCUGGu-------GGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 158012 0.7 0.668918
Target:  5'- aGGGcGGCGUUCucccccguaaaGACCACCCGGUUCu -3'
miRNA:   3'- -UCC-UCGUAGGuuc--------CUGGUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 157787 0.68 0.759979
Target:  5'- cGGGAGCccccGUCCAcaaacAGGGCCA---GGUCCg -3'
miRNA:   3'- -UCCUCG----UAGGU-----UCCUGGUgggCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 157632 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 157426 0.73 0.503559
Target:  5'- gAGGGGUgaggacuuuggCCucuGGGGCCACCCGGgcugCCg -3'
miRNA:   3'- -UCCUCGua---------GGu--UCCUGGUGGGCCa---GG- -5'
29150 3' -57.8 NC_006146.1 + 156338 0.67 0.829444
Target:  5'- uGGGGCucacgCCccgaAAGcGGCCcagcagcuccaggGCCCGGUCCa -3'
miRNA:   3'- uCCUCGua---GG----UUC-CUGG-------------UGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 155575 0.72 0.543854
Target:  5'- cGGGGCGcccgCCAGGGGCaCACCgGGgcuggCCu -3'
miRNA:   3'- uCCUCGUa---GGUUCCUG-GUGGgCCa----GG- -5'
29150 3' -57.8 NC_006146.1 + 155361 0.71 0.623004
Target:  5'- gAGGGGC--CCGAGGGCCugaaaggcCCCGGcgCCu -3'
miRNA:   3'- -UCCUCGuaGGUUCCUGGu-------GGGCCa-GG- -5'
29150 3' -57.8 NC_006146.1 + 154554 0.66 0.846267
Target:  5'- gAGGGGC-UCUggGGcGCCGguccCCUGGUUCc -3'
miRNA:   3'- -UCCUCGuAGGuuCC-UGGU----GGGCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.