miRNA display CGI


Results 21 - 40 of 308 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29150 3' -57.8 NC_006146.1 + 13259 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 13366 0.7 0.632998
Target:  5'- gGGGAGCcgCCcucGGGGCCcaggGCCCcuaGUCCa -3'
miRNA:   3'- -UCCUCGuaGGu--UCCUGG----UGGGc--CAGG- -5'
29150 3' -57.8 NC_006146.1 + 13409 0.72 0.563417
Target:  5'- gAGGAGCAcCuCAGGGuGCCucCCCgGGUCCc -3'
miRNA:   3'- -UCCUCGUaG-GUUCC-UGGu-GGG-CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 13418 0.66 0.861531
Target:  5'- --aGGUcUgCAAGGcCCGCCCGGUCa -3'
miRNA:   3'- uccUCGuAgGUUCCuGGUGGGCCAGg -5'
29150 3' -57.8 NC_006146.1 + 13589 0.73 0.477428
Target:  5'- cAGGGGCcUCCcAGGGCCcUCCaGUCCa -3'
miRNA:   3'- -UCCUCGuAGGuUCCUGGuGGGcCAGG- -5'
29150 3' -57.8 NC_006146.1 + 14035 0.67 0.81357
Target:  5'- aGGGAGCAggCGGGGGCaggcgcaagCGCCggcuggcugCGGUCCu -3'
miRNA:   3'- -UCCUCGUagGUUCCUG---------GUGG---------GCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 15032 0.73 0.496028
Target:  5'- gAGGGGCGccuggCCAGGGcCCGCCgGG-CCu -3'
miRNA:   3'- -UCCUCGUa----GGUUCCuGGUGGgCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 15395 0.68 0.787373
Target:  5'- aAGGAGCAguaccuacgCCAGGuGGCCucagaggggcugGCCCGGcugcagUCCu -3'
miRNA:   3'- -UCCUCGUa--------GGUUC-CUGG------------UGGGCC------AGG- -5'
29150 3' -57.8 NC_006146.1 + 15850 0.7 0.672893
Target:  5'- cGGcGGGCG-CCAccAGGucccaaCACCCGGUCCc -3'
miRNA:   3'- -UC-CUCGUaGGU--UCCug----GUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 16077 0.7 0.672893
Target:  5'- gGGGAGUGgagGGGGAUCGCCCgGGUCUc -3'
miRNA:   3'- -UCCUCGUaggUUCCUGGUGGG-CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 16337 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 16444 0.7 0.632998
Target:  5'- gGGGAGCcgCCcucGGGGCCcaggGCCCcuaGUCCa -3'
miRNA:   3'- -UCCUCGuaGGu--UCCUGG----UGGGc--CAGG- -5'
29150 3' -57.8 NC_006146.1 + 16487 0.72 0.563417
Target:  5'- gAGGAGCAcCuCAGGGuGCCucCCCgGGUCCc -3'
miRNA:   3'- -UCCUCGUaG-GUUCC-UGGu-GGG-CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 16667 0.73 0.477428
Target:  5'- cAGGGGCcUCCcAGGGCCcUCCaGUCCa -3'
miRNA:   3'- -UCCUCGuAGGuUCCUGGuGGGcCAGG- -5'
29150 3' -57.8 NC_006146.1 + 18649 0.67 0.830262
Target:  5'- --aGGCAgCCAGGGAUCgcauGCCCGG-CCu -3'
miRNA:   3'- uccUCGUaGGUUCCUGG----UGGGCCaGG- -5'
29150 3' -57.8 NC_006146.1 + 18928 0.7 0.672893
Target:  5'- cGGcGGGCG-CCAccAGGucccaaCACCCGGUCCc -3'
miRNA:   3'- -UC-CUCGUaGGU--UCCug----GUGGGCCAGG- -5'
29150 3' -57.8 NC_006146.1 + 19155 0.7 0.672893
Target:  5'- gGGGAGUGgagGGGGAUCGCCCgGGUCUc -3'
miRNA:   3'- -UCCUCGUaggUUCCUGGUGGG-CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 19415 0.66 0.868869
Target:  5'- cAGGGGgAaCCAgGGGACCggcGCCCcagagccccucgGGUCCg -3'
miRNA:   3'- -UCCUCgUaGGU-UCCUGG---UGGG------------CCAGG- -5'
29150 3' -57.8 NC_006146.1 + 19522 0.7 0.632998
Target:  5'- gGGGAGCcgCCcucGGGGCCcaggGCCCcuaGUCCa -3'
miRNA:   3'- -UCCUCGuaGGu--UCCUGG----UGGGc--CAGG- -5'
29150 3' -57.8 NC_006146.1 + 19565 0.72 0.563417
Target:  5'- gAGGAGCAcCuCAGGGuGCCucCCCgGGUCCc -3'
miRNA:   3'- -UCCUCGUaG-GUUCC-UGGu-GGG-CCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.