Results 1 - 20 of 308 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29150 | 3' | -57.8 | NC_006146.1 | + | 126684 | 0.66 | 0.882933 |
Target: 5'- gAGGAGaCGgucaCCAAGGcACCGCCCccGG-CUg -3' miRNA: 3'- -UCCUC-GUa---GGUUCC-UGGUGGG--CCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 131461 | 0.66 | 0.882933 |
Target: 5'- gAGGAGCAgggCCca-GugCACCCaggugGGUCUg -3' miRNA: 3'- -UCCUCGUa--GGuucCugGUGGG-----CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 89689 | 0.66 | 0.882933 |
Target: 5'- aAGGGGC--CCGGGGaACgGCCUgggauacacgGGUCCg -3' miRNA: 3'- -UCCUCGuaGGUUCC-UGgUGGG----------CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 139199 | 0.66 | 0.882933 |
Target: 5'- aAGGGGCGguggcagCCGcGGucccCCACCCuucccuGGUCCc -3' miRNA: 3'- -UCCUCGUa------GGUuCCu---GGUGGG------CCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 108983 | 0.66 | 0.882933 |
Target: 5'- uGGAGCccCUGAuGGcCCGCCgGGUCUu -3' miRNA: 3'- uCCUCGuaGGUU-CCuGGUGGgCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 33562 | 0.66 | 0.882933 |
Target: 5'- uGGuGCuccUCCGGGGgucGCCGCguucgCUGGUCCg -3' miRNA: 3'- uCCuCGu--AGGUUCC---UGGUG-----GGCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 70676 | 0.66 | 0.882933 |
Target: 5'- cGGGAGgugaugaucacuCAggCCAcGGGCCGCCUGGUg- -3' miRNA: 3'- -UCCUC------------GUa-GGUuCCUGGUGGGCCAgg -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 3725 | 0.66 | 0.882933 |
Target: 5'- cAGG-GUcUCUggGGGCCGCgUGGcCCu -3' miRNA: 3'- -UCCuCGuAGGuuCCUGGUGgGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 123627 | 0.66 | 0.882933 |
Target: 5'- cAGGA-CGUUCugcAGGACCucgucACCCGGgCCa -3' miRNA: 3'- -UCCUcGUAGGu--UCCUGG-----UGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 103089 | 0.66 | 0.882933 |
Target: 5'- cGGAGCuguuuacuUCCGaggcGGGGCagaGCCUGG-CCg -3' miRNA: 3'- uCCUCGu-------AGGU----UCCUGg--UGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 9009 | 0.66 | 0.882933 |
Target: 5'- cGGGGCGUugcCCAaaAGGGaaGCCgGGUCUc -3' miRNA: 3'- uCCUCGUA---GGU--UCCUggUGGgCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 123697 | 0.66 | 0.882933 |
Target: 5'- cGGAgGCggCCAGGGGCCuggcGCUCGGg-- -3' miRNA: 3'- uCCU-CGuaGGUUCCUGG----UGGGCCagg -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 3016 | 0.66 | 0.876005 |
Target: 5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3' miRNA: 3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 115971 | 0.66 | 0.876005 |
Target: 5'- -cGGGCAgacgUCGAGGccuaCugCCGGUCCc -3' miRNA: 3'- ucCUCGUa---GGUUCCug--GugGGCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 54053 | 0.66 | 0.876005 |
Target: 5'- cGGcGGUggUCAGGGcCCACCUGG-CCg -3' miRNA: 3'- uCC-UCGuaGGUUCCuGGUGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 42835 | 0.66 | 0.876005 |
Target: 5'- cAGGAuCAgggCCucGAGGGCCGCCaGGcCCa -3' miRNA: 3'- -UCCUcGUa--GG--UUCCUGGUGGgCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 101633 | 0.66 | 0.876005 |
Target: 5'- uGGGccagcuGCAUCUucgagGAGGACCcggACCUGGcCCu -3' miRNA: 3'- -UCCu-----CGUAGG-----UUCCUGG---UGGGCCaGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 40850 | 0.66 | 0.876005 |
Target: 5'- aGGGGGCGcUCUugGAGGcCCGgcuCgCGGUCCg -3' miRNA: 3'- -UCCUCGU-AGG--UUCCuGGU---GgGCCAGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 2084 | 0.66 | 0.876005 |
Target: 5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3' miRNA: 3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5' |
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29150 | 3' | -57.8 | NC_006146.1 | + | 1152 | 0.66 | 0.876005 |
Target: 5'- -cGAGgGUCCccGGGCCGcCCCGGggcUCCc -3' miRNA: 3'- ucCUCgUAGGuuCCUGGU-GGGCC---AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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