miRNA display CGI


Results 41 - 60 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 2443 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 1511 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 580 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 28753 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 22597 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 99715 0.66 0.922265
Target:  5'- -uGAGGAUcuucaggcugacgCGGUGcuCCGAggacGCGGACCCa -3'
miRNA:   3'- uuCUCCUG-------------GCCAU--GGUU----UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 19519 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 25675 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 16441 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 45040 0.66 0.922265
Target:  5'- gGAGAGaGGCCGGgGCCGgcucccuaggGGCGGcugagguGCCUCg -3'
miRNA:   3'- -UUCUC-CUGGCCaUGGU----------UUGCC-------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13363 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 56413 0.66 0.917242
Target:  5'- --cGGGACCGGgaGCCuAAGCGucauGCCCCc -3'
miRNA:   3'- uucUCCUGGCCa-UGG-UUUGCc---UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 139199 0.66 0.917242
Target:  5'- --aAGGGgCGGUGgCAGccGCGGuCCCCc -3'
miRNA:   3'- uucUCCUgGCCAUgGUU--UGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 60483 0.66 0.916672
Target:  5'- uGAGAGG-CCGGgggGCCAgcucccccGACGGcgaggguGCuCCCa -3'
miRNA:   3'- -UUCUCCuGGCCa--UGGU--------UUGCC-------UG-GGG- -5'
29151 3' -55.8 NC_006146.1 + 30472 0.67 0.911439
Target:  5'- uAGGAcacaaGACUGGaaccucuuccUGCC-AACGGGCCCCa -3'
miRNA:   3'- -UUCUc----CUGGCC----------AUGGuUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 4428 0.67 0.911439
Target:  5'- --aGGGGCUGGUGaaAAGCGG-CCUCg -3'
miRNA:   3'- uucUCCUGGCCAUggUUUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 69058 0.67 0.911439
Target:  5'- -cGuGGugCGGcagcCCGAGCgcucGGGCCCCg -3'
miRNA:   3'- uuCuCCugGCCau--GGUUUG----CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 123367 0.67 0.911439
Target:  5'- gAGGAGGACCG-----AGGCGGcGCCCCc -3'
miRNA:   3'- -UUCUCCUGGCcauggUUUGCC-UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 168331 0.67 0.910846
Target:  5'- aGGGcGGGGCCGGgGCCuGGCGGGggccagcgcggggUCCCg -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGuUUGCCU-------------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 167399 0.67 0.910846
Target:  5'- aGGGcGGGGCCGGgGCCuGGCGGGggccagcgcggggUCCCg -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGuUUGCCU-------------GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.