Results 21 - 40 of 322 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29151 | 3' | -55.8 | NC_006146.1 | + | 25761 | 0.66 | 0.928146 |
Target: 5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3' miRNA: 3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 28839 | 0.66 | 0.928146 |
Target: 5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3' miRNA: 3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 16527 | 0.66 | 0.928146 |
Target: 5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3' miRNA: 3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 13449 | 0.66 | 0.928146 |
Target: 5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3' miRNA: 3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 22683 | 0.66 | 0.928146 |
Target: 5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3' miRNA: 3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 123259 | 0.66 | 0.928146 |
Target: 5'- ---uGGGCCGGgccgcgGCCAgaGACGGcucgugGCCCUa -3' miRNA: 3'- uucuCCUGGCCa-----UGGU--UUGCC------UGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 18940 | 0.66 | 0.928146 |
Target: 5'- -cGAGGACgggaagggcaugUGGUGCgCcAGCGG-CCCCu -3' miRNA: 3'- uuCUCCUG------------GCCAUG-GuUUGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 19605 | 0.66 | 0.928146 |
Target: 5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3' miRNA: 3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 3318 | 0.66 | 0.927097 |
Target: 5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3' miRNA: 3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 2386 | 0.66 | 0.927097 |
Target: 5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3' miRNA: 3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 1454 | 0.66 | 0.927097 |
Target: 5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3' miRNA: 3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 523 | 0.66 | 0.927097 |
Target: 5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3' miRNA: 3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 33348 | 0.66 | 0.92657 |
Target: 5'- -cGGGGcaGCCGGguggccGCCGGugGGuccgccgggccgcuGCCCCg -3' miRNA: 3'- uuCUCC--UGGCCa-----UGGUUugCC--------------UGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 56819 | 0.66 | 0.922811 |
Target: 5'- --cAGGACaUGGUGCCGGAUGaGAUugCCCg -3' miRNA: 3'- uucUCCUG-GCCAUGGUUUGC-CUG--GGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 120927 | 0.66 | 0.922811 |
Target: 5'- --uGGcGGCCGGU-CCAAaaccGCGGGCCUUg -3' miRNA: 3'- uucUC-CUGGCCAuGGUU----UGCCUGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 115936 | 0.66 | 0.922811 |
Target: 5'- -cGGGGGCagCGGUAgCGgcGGCGGcggucGCCCCg -3' miRNA: 3'- uuCUCCUG--GCCAUgGU--UUGCC-----UGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 1511 | 0.66 | 0.922811 |
Target: 5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3' miRNA: 3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 580 | 0.66 | 0.922811 |
Target: 5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3' miRNA: 3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 103304 | 0.66 | 0.922811 |
Target: 5'- ---cGcACCGGagGCCAAacgccACGGGCCCCc -3' miRNA: 3'- uucuCcUGGCCa-UGGUU-----UGCCUGGGG- -5' |
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29151 | 3' | -55.8 | NC_006146.1 | + | 129114 | 0.66 | 0.922811 |
Target: 5'- cAGAGGGCCuGa---GAGCGGGCgCCCg -3' miRNA: 3'- uUCUCCUGGcCauggUUUGCCUG-GGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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