miRNA display CGI


Results 21 - 40 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 13269 0.69 0.807516
Target:  5'- cAGGGGACCGGcGCCcca-GaGCCCCu -3'
miRNA:   3'- uUCUCCUGGCCaUGGuuugCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13363 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13449 0.66 0.928146
Target:  5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3'
miRNA:   3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13728 0.69 0.824684
Target:  5'- --cAGG-CCGG--CCGGAgGGACCCCg -3'
miRNA:   3'- uucUCCuGGCCauGGUUUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13842 0.69 0.824684
Target:  5'- --cAGG-CCGG--CCGGAgGGACCCCg -3'
miRNA:   3'- uucUCCuGGCCauGGUUUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 14807 0.7 0.730362
Target:  5'- gGAGAGG-CCGGccggGCCGGAggagggcacggucuCGGGCCCg -3'
miRNA:   3'- -UUCUCCuGGCCa---UGGUUU--------------GCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 15244 0.67 0.905403
Target:  5'- gAAGAGGACgGGccGgUAAGCGGuCCaCCa -3'
miRNA:   3'- -UUCUCCUGgCCa-UgGUUUGCCuGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 15305 0.71 0.703776
Target:  5'- gAGGAgGGGCCGGagGCCAGcccCGGuguGCCCCu -3'
miRNA:   3'- -UUCU-CCUGGCCa-UGGUUu--GCC---UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 15527 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 15996 0.68 0.856899
Target:  5'- aAGGGcGGACgCGGUcagcCCGGGCGaGGCCCUg -3'
miRNA:   3'- -UUCU-CCUG-GCCAu---GGUUUGC-CUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 16347 0.69 0.807516
Target:  5'- cAGGGGACCGGcGCCcca-GaGCCCCu -3'
miRNA:   3'- uUCUCCUGGCCaUGGuuugCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 16441 0.66 0.922265
Target:  5'- aGAGGGGAgccgcccUCGGgGCCca--GGGCCCCu -3'
miRNA:   3'- -UUCUCCU-------GGCCaUGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 16527 0.66 0.928146
Target:  5'- cGGAGGGaccCCGGcagcCCGggUGG-CCCCa -3'
miRNA:   3'- uUCUCCU---GGCCau--GGUuuGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 16806 0.69 0.824684
Target:  5'- --cAGG-CCGG--CCGGAgGGACCCCg -3'
miRNA:   3'- uucUCCuGGCCauGGUUUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 16920 0.69 0.824684
Target:  5'- --cAGG-CCGG--CCGGAgGGACCCCg -3'
miRNA:   3'- uucUCCuGGCCauGGUUUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 18322 0.67 0.905403
Target:  5'- gAAGAGGACgGGccGgUAAGCGGuCCaCCa -3'
miRNA:   3'- -UUCUCCUGgCCa-UgGUUUGCCuGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 18605 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 18940 0.66 0.928146
Target:  5'- -cGAGGACgggaagggcaugUGGUGCgCcAGCGG-CCCCu -3'
miRNA:   3'- uuCUCCUG------------GCCAUG-GuUUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 18986 0.78 0.347327
Target:  5'- cGGcAGGGCCGGaGCCAGACcccaguggGGGCCCCc -3'
miRNA:   3'- uUC-UCCUGGCCaUGGUUUG--------CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 19425 0.69 0.807516
Target:  5'- cAGGGGACCGGcGCCcca-GaGCCCCu -3'
miRNA:   3'- uUCUCCUGGCCaUGGuuugCcUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.