miRNA display CGI


Results 1 - 20 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 190 0.69 0.816182
Target:  5'- aAAG-GGucuucucuacgcGCCGGUGCCcccgcGACGGuCCCCg -3'
miRNA:   3'- -UUCuCC------------UGGCCAUGGu----UUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 277 0.73 0.572638
Target:  5'- gAGGGGGAgcCCGGgaagACCcggGGGCGGGCCCg -3'
miRNA:   3'- -UUCUCCU--GGCCa---UGG---UUUGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 523 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 580 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 1208 0.67 0.878988
Target:  5'- gAGGGGGAgcCCGGgaagACCcggGGGCGGGCCa- -3'
miRNA:   3'- -UUCUCCU--GGCCa---UGG---UUUGCCUGGgg -5'
29151 3' -55.8 NC_006146.1 + 1454 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 1511 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 2140 0.67 0.878988
Target:  5'- gAGGGGGAgcCCGGgaagACCcggGGGCGGGCCa- -3'
miRNA:   3'- -UUCUCCU--GGCCa---UGG---UUUGCCUGGgg -5'
29151 3' -55.8 NC_006146.1 + 2386 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 2443 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 3072 0.67 0.878988
Target:  5'- gAGGGGGAgcCCGGgaagACCcggGGGCGGGCCa- -3'
miRNA:   3'- -UUCUCCU--GGCCa---UGG---UUUGCCUGGgg -5'
29151 3' -55.8 NC_006146.1 + 3318 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 3375 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 3813 0.68 0.864469
Target:  5'- --cAGGuCUGGgucagGCCAGGCGGggcACCCCc -3'
miRNA:   3'- uucUCCuGGCCa----UGGUUUGCC---UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 4428 0.67 0.911439
Target:  5'- --aGGGGCUGGUGaaAAGCGG-CCUCg -3'
miRNA:   3'- uucUCCUGGCCAUggUUUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 6438 0.66 0.933245
Target:  5'- -uGuGGGCCcuggGGU-CC-AugGGGCCCCa -3'
miRNA:   3'- uuCuCCUGG----CCAuGGuUugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 11803 0.69 0.822151
Target:  5'- --aGGGGCUGGggACCcugcaggaggggaaGGugGGACCCCu -3'
miRNA:   3'- uucUCCUGGCCa-UGG--------------UUugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 12079 0.67 0.885927
Target:  5'- -cGAGGGCCGGgccCCGGcCGuGugCCUg -3'
miRNA:   3'- uuCUCCUGGCCau-GGUUuGC-CugGGG- -5'
29151 3' -55.8 NC_006146.1 + 12448 0.66 0.931234
Target:  5'- uGAGccAGGcGCCGGgGCCuuucaggcccuCGGGCCCCu -3'
miRNA:   3'- -UUC--UCC-UGGCCaUGGuuu--------GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13265 0.76 0.412565
Target:  5'- --aGGGGCUGGUGCCcaagacccAGGCGGugCCCg -3'
miRNA:   3'- uucUCCUGGCCAUGG--------UUUGCCugGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.