miRNA display CGI


Results 1 - 20 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 164519 1.1 0.002978
Target:  5'- cAAGAGGACCGGUACCAAACGGACCCCa -3'
miRNA:   3'- -UUCUCCUGGCCAUGGUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156204 0.71 0.72254
Target:  5'- --cGGGACCgccagguGGUugCAGgagacGCGGGCCCCc -3'
miRNA:   3'- uucUCCUGG-------CCAugGUU-----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 46932 0.7 0.733281
Target:  5'- -cGGGGACuCGGUcuccaGCCAcAgGGugCCCg -3'
miRNA:   3'- uuCUCCUG-GCCA-----UGGUuUgCCugGGG- -5'
29151 3' -55.8 NC_006146.1 + 169742 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 138020 0.74 0.532962
Target:  5'- ---cGGACCcuGGUGCCAGGCagGGACCUCg -3'
miRNA:   3'- uucuCCUGG--CCAUGGUUUG--CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 109201 0.74 0.542798
Target:  5'- cAGAGGGCUGG-ACUGgcGGCGGuCCCCa -3'
miRNA:   3'- uUCUCCUGGCCaUGGU--UUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 43780 0.73 0.592749
Target:  5'- aGAGGGGACCaccaGGUcuCCGGGCGucGACCCCc -3'
miRNA:   3'- -UUCUCCUGG----CCAu-GGUUUGC--CUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 53205 0.72 0.623108
Target:  5'- uGGGGGGCgGcGUGCCAAacuccGCGGGCCUUc -3'
miRNA:   3'- uUCUCCUGgC-CAUGGUU-----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 33658 0.72 0.633251
Target:  5'- gGAGGGGugUGGUcCCcg--GGACCCCa -3'
miRNA:   3'- -UUCUCCugGCCAuGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 127231 0.71 0.703776
Target:  5'- cGGAGGGCCuGGagcgaaUGCgAGcCGGGCCCCu -3'
miRNA:   3'- uUCUCCUGG-CC------AUGgUUuGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 160421 0.72 0.653527
Target:  5'- uAGAGGGCgaGGUAgUggGCGGugGCCCCc -3'
miRNA:   3'- uUCUCCUGg-CCAUgGuuUGCC--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156842 0.72 0.623108
Target:  5'- cGGGAGGACCGcaGCCAGcCGGcgcuugcgccuGCCCCc -3'
miRNA:   3'- -UUCUCCUGGCcaUGGUUuGCC-----------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 164634 0.79 0.317587
Target:  5'- uAGAuGAUCGGggucGCCAGACGGACCCUg -3'
miRNA:   3'- uUCUcCUGGCCa---UGGUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 119825 0.72 0.673735
Target:  5'- cGGGGGACCGG--CCAGA-GGACCUg -3'
miRNA:   3'- uUCUCCUGGCCauGGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 46245 0.74 0.523191
Target:  5'- aGGGAGGGCCGGUGaagcGGCGGugcgcguCCCCg -3'
miRNA:   3'- -UUCUCCUGGCCAUggu-UUGCCu------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 67250 0.72 0.623108
Target:  5'- cGGAGG-CUGGggggaUAGGCGGGCCCCu -3'
miRNA:   3'- uUCUCCuGGCCaug--GUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 123920 0.71 0.69381
Target:  5'- -uGAGaGACgGGUaACUGAACGGuCCCCu -3'
miRNA:   3'- uuCUC-CUGgCCA-UGGUUUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 92926 0.71 0.72352
Target:  5'- aGAGAGGACCGGcaccuCCAAggccACcGGCUCCg -3'
miRNA:   3'- -UUCUCCUGGCCau---GGUU----UGcCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 34190 0.74 0.532962
Target:  5'- ---cGGACCcuGGUGCCAGGCagGGACCUCg -3'
miRNA:   3'- uucuCCUGG--CCAUGGUUUG--CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 70834 0.73 0.582676
Target:  5'- --uGGGGCCaaGG-GCCAAGCGGGCCCg -3'
miRNA:   3'- uucUCCUGG--CCaUGGUUUGCCUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.