miRNA display CGI


Results 1 - 20 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 169742 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 56819 0.66 0.922811
Target:  5'- --cAGGACaUGGUGCCGGAUGaGAUugCCCg -3'
miRNA:   3'- uucUCCUG-GCCAUGGUUUGC-CUG--GGG- -5'
29151 3' -55.8 NC_006146.1 + 120927 0.66 0.922811
Target:  5'- --uGGcGGCCGGU-CCAAaaccGCGGGCCUUg -3'
miRNA:   3'- uucUC-CUGGCCAuGGUU----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 115936 0.66 0.922811
Target:  5'- -cGGGGGCagCGGUAgCGgcGGCGGcggucGCCCCg -3'
miRNA:   3'- uuCUCCUG--GCCAUgGU--UUGCC-----UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 52636 0.66 0.922811
Target:  5'- ---uGGACCGG-GCCGAgaacAUGGGCUCUg -3'
miRNA:   3'- uucuCCUGGCCaUGGUU----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 3375 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 2443 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 1511 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 580 0.66 0.922811
Target:  5'- gGAGAgGGGCCGGgggcgcgGCCcGGCGccaGCCCUg -3'
miRNA:   3'- -UUCU-CCUGGCCa------UGGuUUGCc--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 523 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 1454 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 2386 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5'
29151 3' -55.8 NC_006146.1 + 70720 0.66 0.93811
Target:  5'- cAGGAGGAgCGGggggcuuauUGCCccccucGCGGACgCCg -3'
miRNA:   3'- -UUCUCCUgGCC---------AUGGuu----UGCCUGgGG- -5'
29151 3' -55.8 NC_006146.1 + 129277 0.66 0.93811
Target:  5'- --uGGGGCUGGUcugcgcccggGCCcAGCGGAccagccCCCCg -3'
miRNA:   3'- uucUCCUGGCCA----------UGGuUUGCCU------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 104120 0.66 0.93811
Target:  5'- --uGGGcCCGGUGuCCAGGuCGcACCCCg -3'
miRNA:   3'- uucUCCuGGCCAU-GGUUU-GCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 71594 0.66 0.937634
Target:  5'- cAGcAGGuCUGGcccugACCAGGCGGgagauuaACCCCa -3'
miRNA:   3'- uUC-UCCuGGCCa----UGGUUUGCC-------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 6438 0.66 0.933245
Target:  5'- -uGuGGGCCcuggGGU-CC-AugGGGCCCCa -3'
miRNA:   3'- uuCuCCUGG----CCAuGGuUugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 123259 0.66 0.928146
Target:  5'- ---uGGGCCGGgccgcgGCCAgaGACGGcucgugGCCCUa -3'
miRNA:   3'- uucuCCUGGCCa-----UGGU--UUGCC------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 18940 0.66 0.928146
Target:  5'- -cGAGGACgggaagggcaugUGGUGCgCcAGCGG-CCCCu -3'
miRNA:   3'- uuCUCCUG------------GCCAUG-GuUUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 3318 0.66 0.927097
Target:  5'- gGGGAGGcCCGGccuccacacacgGCCucuccGCGGGCCuCCa -3'
miRNA:   3'- -UUCUCCuGGCCa-----------UGGuu---UGCCUGG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.