miRNA display CGI


Results 1 - 20 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 164519 1.1 0.002978
Target:  5'- cAAGAGGACCGGUACCAAACGGACCCCa -3'
miRNA:   3'- -UUCUCCUGGCCAUGGUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 27208 0.8 0.276643
Target:  5'- --aAGGACCGGUGCCAGgacACGGGCUUCc -3'
miRNA:   3'- uucUCCUGGCCAUGGUU---UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 33142 0.79 0.316868
Target:  5'- ---cGGACCGG-ACCAgcggacgAGCGGACCCCc -3'
miRNA:   3'- uucuCCUGGCCaUGGU-------UUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 164634 0.79 0.317587
Target:  5'- uAGAuGAUCGGggucGCCAGACGGACCCUg -3'
miRNA:   3'- uUCUcCUGGCCa---UGGUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 18986 0.78 0.347327
Target:  5'- cGGcAGGGCCGGaGCCAGACcccaguggGGGCCCCc -3'
miRNA:   3'- uUC-UCCUGGCCaUGGUUUG--------CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 27900 0.78 0.350408
Target:  5'- gGAGGGGACCGGgagcugcucccacgGCCAAgggcuaggGCGGaACCCCc -3'
miRNA:   3'- -UUCUCCUGGCCa-------------UGGUU--------UGCC-UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 13265 0.76 0.412565
Target:  5'- --aGGGGCUGGUGCCcaagacccAGGCGGugCCCg -3'
miRNA:   3'- uucUCCUGGCCAUGG--------UUUGCCugGGG- -5'
29151 3' -55.8 NC_006146.1 + 157591 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 151435 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 142201 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 145279 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 154513 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 148357 0.75 0.500988
Target:  5'- aGAGGGGAgCGGagACCAGgaggacgccuggagGCGGACCCg -3'
miRNA:   3'- -UUCUCCUgGCCa-UGGUU--------------UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 46245 0.74 0.523191
Target:  5'- aGGGAGGGCCGGUGaagcGGCGGugcgcguCCCCg -3'
miRNA:   3'- -UUCUCCUGGCCAUggu-UUGCCu------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 116837 0.74 0.523191
Target:  5'- --cGGGACgCGGcgGCCAggUGGGCCCUg -3'
miRNA:   3'- uucUCCUG-GCCa-UGGUuuGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 72190 0.74 0.530024
Target:  5'- -cGAGGACgCGGcgGCCGGAUGGgcgggagaccagcgGCCCCa -3'
miRNA:   3'- uuCUCCUG-GCCa-UGGUUUGCC--------------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 115982 0.74 0.532962
Target:  5'- -cGAGGccuacuGCCGGUcccugaaggccgGCCAgacggcgcgAGCGGACCCCg -3'
miRNA:   3'- uuCUCC------UGGCCA------------UGGU---------UUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 52969 0.74 0.532962
Target:  5'- gGAGAaGGCCGGUaguGCgCAGGCGGACCUg -3'
miRNA:   3'- -UUCUcCUGGCCA---UG-GUUUGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 34190 0.74 0.532962
Target:  5'- ---cGGACCcuGGUGCCAGGCagGGACCUCg -3'
miRNA:   3'- uucuCCUGG--CCAUGGUUUG--CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 138020 0.74 0.532962
Target:  5'- ---cGGACCcuGGUGCCAGGCagGGACCUCg -3'
miRNA:   3'- uucuCCUGG--CCAUGGUUUG--CCUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.