miRNA display CGI


Results 21 - 40 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 109201 0.74 0.542798
Target:  5'- cAGAGGGCUGG-ACUGgcGGCGGuCCCCa -3'
miRNA:   3'- uUCUCCUGGCCaUGGU--UUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 131841 0.74 0.562642
Target:  5'- cGGAGG-CCGGcgACCAuucacaGGGCCCCu -3'
miRNA:   3'- uUCUCCuGGCCa-UGGUuug---CCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 277 0.73 0.572638
Target:  5'- gAGGGGGAgcCCGGgaagACCcggGGGCGGGCCCg -3'
miRNA:   3'- -UUCUCCU--GGCCa---UGG---UUUGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 70834 0.73 0.582676
Target:  5'- --uGGGGCCaaGG-GCCAAGCGGGCCCg -3'
miRNA:   3'- uucUCCUGG--CCaUGGUUUGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 43780 0.73 0.592749
Target:  5'- aGAGGGGACCaccaGGUcuCCGGGCGucGACCCCc -3'
miRNA:   3'- -UUCUCCUGG----CCAu-GGUUUGC--CUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 67250 0.72 0.623108
Target:  5'- cGGAGG-CUGGggggaUAGGCGGGCCCCu -3'
miRNA:   3'- uUCUCCuGGCCaug--GUUUGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156842 0.72 0.623108
Target:  5'- cGGGAGGACCGcaGCCAGcCGGcgcuugcgccuGCCCCc -3'
miRNA:   3'- -UUCUCCUGGCcaUGGUUuGCC-----------UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 53205 0.72 0.623108
Target:  5'- uGGGGGGCgGcGUGCCAAacuccGCGGGCCUUc -3'
miRNA:   3'- uUCUCCUGgC-CAUGGUU-----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 129547 0.72 0.633251
Target:  5'- cAGAGGACaCGuGUcuCCAAcUGGACCCCc -3'
miRNA:   3'- uUCUCCUG-GC-CAu-GGUUuGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 33658 0.72 0.633251
Target:  5'- gGAGGGGugUGGUcCCcg--GGACCCCa -3'
miRNA:   3'- -UUCUCCugGCCAuGGuuugCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 51584 0.72 0.643393
Target:  5'- gGAGGGGcCCGGgggaGCCAGAgGGGCCa- -3'
miRNA:   3'- -UUCUCCuGGCCa---UGGUUUgCCUGGgg -5'
29151 3' -55.8 NC_006146.1 + 160421 0.72 0.653527
Target:  5'- uAGAGGGCgaGGUAgUggGCGGugGCCCCc -3'
miRNA:   3'- uUCUCCUGg-CCAUgGuuUGCC--UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 119825 0.72 0.673735
Target:  5'- cGGGGGACCGG--CCAGA-GGACCUg -3'
miRNA:   3'- uUCUCCUGGCCauGGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 126463 0.71 0.682789
Target:  5'- cGGGAGGcuauggcACgGGUGCCAGACcccgGGAgCCCCu -3'
miRNA:   3'- -UUCUCC-------UGgCCAUGGUUUG----CCU-GGGG- -5'
29151 3' -55.8 NC_006146.1 + 116765 0.71 0.69381
Target:  5'- cAGGGGGGCCGcUACUAcuccACGGACCUg -3'
miRNA:   3'- -UUCUCCUGGCcAUGGUu---UGCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 123920 0.71 0.69381
Target:  5'- -uGAGaGACgGGUaACUGAACGGuCCCCu -3'
miRNA:   3'- uuCUC-CUGgCCA-UGGUUUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 127231 0.71 0.703776
Target:  5'- cGGAGGGCCuGGagcgaaUGCgAGcCGGGCCCCu -3'
miRNA:   3'- uUCUCCUGG-CC------AUGgUUuGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 15305 0.71 0.703776
Target:  5'- gAGGAgGGGCCGGagGCCAGcccCGGuguGCCCCu -3'
miRNA:   3'- -UUCU-CCUGGCCa-UGGUUu--GCC---UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 156204 0.71 0.72254
Target:  5'- --cGGGACCgccagguGGUugCAGgagacGCGGGCCCCc -3'
miRNA:   3'- uucUCCUGG-------CCAugGUU-----UGCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 168500 0.71 0.72352
Target:  5'- cGGGGGGCCGGggACCA-ACaGAgCCCu -3'
miRNA:   3'- uUCUCCUGGCCa-UGGUuUGcCUgGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.