miRNA display CGI


Results 1 - 20 of 322 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 3' -55.8 NC_006146.1 + 170484 0.67 0.899138
Target:  5'- gAGGGGcGAgCGGgggGCUucccCGGACCCCc -3'
miRNA:   3'- -UUCUC-CUgGCCa--UGGuuu-GCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 170437 0.67 0.905403
Target:  5'- -cGGGGcCCGGcgcgUGCCGGG-GGACCCg -3'
miRNA:   3'- uuCUCCuGGCC----AUGGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 170307 0.68 0.864469
Target:  5'- gGGGcAGGGCUGGcGCCGGGcCGcGCCCCc -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGUUU-GCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 170194 0.67 0.910846
Target:  5'- aGGGcGGGGCCGGgGCCuGGCGGGggccagcgcggggUCCCg -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGuUUGCCU-------------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 170095 0.67 0.885927
Target:  5'- cGGGAgGGGCCGGcGCCGcagggggggccGGCGGGgcgUCCCg -3'
miRNA:   3'- -UUCU-CCUGGCCaUGGU-----------UUGCCU---GGGG- -5'
29151 3' -55.8 NC_006146.1 + 169742 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 169506 0.67 0.905403
Target:  5'- -cGGGGcCCGGcgcgUGCCGGG-GGACCCg -3'
miRNA:   3'- uuCUCCuGGCC----AUGGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 169376 0.68 0.864469
Target:  5'- gGGGcAGGGCUGGcGCCGGGcCGcGCCCCc -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGUUU-GCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 169263 0.67 0.910846
Target:  5'- aGGGcGGGGCCGGgGCCuGGCGGGggccagcgcggggUCCCg -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGuUUGCCU-------------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 168810 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 168574 0.67 0.905403
Target:  5'- -cGGGGcCCGGcgcgUGCCGGG-GGACCCg -3'
miRNA:   3'- uuCUCCuGGCC----AUGGUUUgCCUGGGg -5'
29151 3' -55.8 NC_006146.1 + 168500 0.71 0.72352
Target:  5'- cGGGGGGCCGGggACCA-ACaGAgCCCu -3'
miRNA:   3'- uUCUCCUGGCCa-UGGUuUGcCUgGGG- -5'
29151 3' -55.8 NC_006146.1 + 168444 0.68 0.864469
Target:  5'- gGGGcAGGGCUGGcGCCGGGcCGcGCCCCc -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGUUU-GCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 168331 0.67 0.910846
Target:  5'- aGGGcGGGGCCGGgGCCuGGCGGGggccagcgcggggUCCCg -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGuUUGCCU-------------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 167878 0.66 0.93811
Target:  5'- cGGGGGAgccCCGGggcgGCCc-GgGGACCCUc -3'
miRNA:   3'- uUCUCCU---GGCCa---UGGuuUgCCUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 167876 0.7 0.752536
Target:  5'- cGGAGGugCGGUGagguugcuCCAggGAUGGaaagGCCCCa -3'
miRNA:   3'- uUCUCCugGCCAU--------GGU--UUGCC----UGGGG- -5'
29151 3' -55.8 NC_006146.1 + 167512 0.68 0.864469
Target:  5'- gGGGcAGGGCUGGcGCCGGGcCGcGCCCCc -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGUUU-GCcUGGGG- -5'
29151 3' -55.8 NC_006146.1 + 167399 0.67 0.910846
Target:  5'- aGGGcGGGGCCGGgGCCuGGCGGGggccagcgcggggUCCCg -3'
miRNA:   3'- -UUC-UCCUGGCCaUGGuUUGCCU-------------GGGG- -5'
29151 3' -55.8 NC_006146.1 + 167154 0.7 0.762011
Target:  5'- uAGGGGAcccaccCCGGgcugaaggGCCAcGCGGcCCCCa -3'
miRNA:   3'- uUCUCCU------GGCCa-------UGGUuUGCCuGGGG- -5'
29151 3' -55.8 NC_006146.1 + 166360 0.68 0.871834
Target:  5'- gGGGAGGuagucggcggcuGCCGGcACCgAGAUGGucACCCCc -3'
miRNA:   3'- -UUCUCC------------UGGCCaUGG-UUUGCC--UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.