miRNA display CGI


Results 41 - 60 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 60137 0.67 0.994533
Target:  5'- gGAGGGACCU--GGUGGGgGGuguguGCCAGg -3'
miRNA:   3'- -CUUCCUGGAacUCAUUUgCC-----UGGUCg -5'
29151 5' -49.7 NC_006146.1 + 138889 0.68 0.994022
Target:  5'- --cGGACUggGAGUAGGCugaggugacgguacuGGACCuGCc -3'
miRNA:   3'- cuuCCUGGaaCUCAUUUG---------------CCUGGuCG- -5'
29151 5' -49.7 NC_006146.1 + 45134 0.68 0.99366
Target:  5'- -cGGGAgCCUUGGGcUuuGCGGGCUGGg -3'
miRNA:   3'- cuUCCU-GGAACUC-AuuUGCCUGGUCg -5'
29151 5' -49.7 NC_006146.1 + 111750 0.68 0.99366
Target:  5'- -uGGGuggcguCCcUGAG---GCGGGCCAGCa -3'
miRNA:   3'- cuUCCu-----GGaACUCauuUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 127231 0.68 0.99366
Target:  5'- cGGAGGGCCUgGAGcGAAUGcGAgCCGGg -3'
miRNA:   3'- -CUUCCUGGAaCUCaUUUGC-CU-GGUCg -5'
29151 5' -49.7 NC_006146.1 + 48322 0.68 0.99366
Target:  5'- cGGAGGugCUggcGGUGGugGG-CCAGg -3'
miRNA:   3'- -CUUCCugGAac-UCAUUugCCuGGUCg -5'
29151 5' -49.7 NC_006146.1 + 128865 0.68 0.99366
Target:  5'- gGAAGGGCCacgaagagGGGgcggAGGCGGGCCcgaacgcgGGCu -3'
miRNA:   3'- -CUUCCUGGaa------CUCa---UUUGCCUGG--------UCG- -5'
29151 5' -49.7 NC_006146.1 + 170198 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169267 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167403 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 168335 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 160014 0.68 0.991579
Target:  5'- uGGAGGGCCUUGAcGUugauGCuGAagcCCGGCu -3'
miRNA:   3'- -CUUCCUGGAACU-CAuu--UGcCU---GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 39055 0.68 0.991579
Target:  5'- cAGGGGCCcu--GUGAAUGGucGCCGGCc -3'
miRNA:   3'- cUUCCUGGaacuCAUUUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 48219 0.68 0.991579
Target:  5'- uGGAGGGCCUggcgcgccUGGGUGAGC--GCCGcGCg -3'
miRNA:   3'- -CUUCCUGGA--------ACUCAUUUGccUGGU-CG- -5'
29151 5' -49.7 NC_006146.1 + 14027 0.68 0.991225
Target:  5'- cGGAGGGCaggGAGcAGGCGGgggcaggcgcaagcGCCGGCu -3'
miRNA:   3'- -CUUCCUGgaaCUCaUUUGCC--------------UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169963 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169031 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167167 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 54818 0.68 0.990353
Target:  5'- aGAGGACCcggcgGAGg--GCGGGCCAa- -3'
miRNA:   3'- cUUCCUGGaa---CUCauuUGCCUGGUcg -5'
29151 5' -49.7 NC_006146.1 + 122195 0.68 0.990353
Target:  5'- gGGAGG-CCagaGAGcGGACGGAgCGGCg -3'
miRNA:   3'- -CUUCCuGGaa-CUCaUUUGCCUgGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.