miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 56200 0.66 0.997565
Target:  5'- -cAGGGCCc-GGGUcucGCGGACgAGCc -3'
miRNA:   3'- cuUCCUGGaaCUCAuu-UGCCUGgUCG- -5'
29151 5' -49.7 NC_006146.1 + 167009 0.66 0.997565
Target:  5'- uGGGGGCCUcGucGGUGGGCcucgccgaGACCAGCa -3'
miRNA:   3'- cUUCCUGGAaC--UCAUUUGc-------CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 135971 0.66 0.997565
Target:  5'- cGGGGugCUgGGGUGgggGAUGGGCUcaGGCa -3'
miRNA:   3'- cUUCCugGAaCUCAU---UUGCCUGG--UCG- -5'
29151 5' -49.7 NC_006146.1 + 32141 0.66 0.997565
Target:  5'- cGGGGugCUgGGGUGgggGAUGGGCUcaGGCa -3'
miRNA:   3'- cUUCCugGAaCUCAU---UUGCCUGG--UCG- -5'
29151 5' -49.7 NC_006146.1 + 74969 0.67 0.99711
Target:  5'- -cGGGGCCaguacaGAGUccagAAGCgGGGCCAGUa -3'
miRNA:   3'- cuUCCUGGaa----CUCA----UUUG-CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 1441 0.67 0.99711
Target:  5'- -uGGGGCaCUggaAGUAAgacauACGGGCCGGUg -3'
miRNA:   3'- cuUCCUG-GAac-UCAUU-----UGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 33097 0.67 0.99711
Target:  5'- --cGGACCggcgGAcccccgAAGCGGAuCCGGCg -3'
miRNA:   3'- cuuCCUGGaa--CUca----UUUGCCU-GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 24351 0.67 0.99711
Target:  5'- gGGAGGAgCUacaAGUAGuggcGCaGGGCCAGCu -3'
miRNA:   3'- -CUUCCUgGAac-UCAUU----UG-CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 126806 0.67 0.996805
Target:  5'- -cGGGGCCUgGAGguuuccGCGGcguugguauuuaaaaACCAGCg -3'
miRNA:   3'- cuUCCUGGAaCUCauu---UGCC---------------UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 17227 0.67 0.996587
Target:  5'- -cAGGACCgcuauGUGAA-GGACCAGg -3'
miRNA:   3'- cuUCCUGGaacu-CAUUUgCCUGGUCg -5'
29151 5' -49.7 NC_006146.1 + 162860 0.67 0.995988
Target:  5'- -cAGGGCC--GGGUccAGCGGguGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCAu-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 71143 0.67 0.995988
Target:  5'- --cGGGCUuaaUUGug-GGugGGACCGGCa -3'
miRNA:   3'- cuuCCUGG---AACucaUUugCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 70834 0.67 0.995988
Target:  5'- -uGGGGCCaaGGGccAAGCGGGCCcGGUg -3'
miRNA:   3'- cuUCCUGGaaCUCa-UUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 86500 0.67 0.995988
Target:  5'- --uGGGCCUUGAGgggcAGCuGGGCUugaggGGCa -3'
miRNA:   3'- cuuCCUGGAACUCau--UUG-CCUGG-----UCG- -5'
29151 5' -49.7 NC_006146.1 + 161024 0.67 0.995988
Target:  5'- ----cGCCUuugUGGGUGAGCGGGCCGu- -3'
miRNA:   3'- cuuccUGGA---ACUCAUUUGCCUGGUcg -5'
29151 5' -49.7 NC_006146.1 + 119838 0.67 0.995793
Target:  5'- aGAGGACCUgGAGaucauucuacaggaUAAcaGCGGgggaagGCCAGCg -3'
miRNA:   3'- cUUCCUGGAaCUC--------------AUU--UGCC------UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 53491 0.67 0.995306
Target:  5'- -cAGGGCCggGGGU--GCGGuCUGGCu -3'
miRNA:   3'- cuUCCUGGaaCUCAuuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 164521 0.67 0.995306
Target:  5'- aGAGGACC---GGUAccaAACGGACCccagGGCc -3'
miRNA:   3'- cUUCCUGGaacUCAU---UUGCCUGG----UCG- -5'
29151 5' -49.7 NC_006146.1 + 45058 0.67 0.995306
Target:  5'- --cGGGCCUUGGGcuuGauGACCGGUc -3'
miRNA:   3'- cuuCCUGGAACUCauuUgcCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 60137 0.67 0.994533
Target:  5'- gGAGGGACCU--GGUGGGgGGuguguGCCAGg -3'
miRNA:   3'- -CUUCCUGGAacUCAUUUgCC-----UGGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.