miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 21383 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 21961 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 23352 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 24351 0.67 0.99711
Target:  5'- gGGAGGAgCUacaAGUAGuggcGCaGGGCCAGCu -3'
miRNA:   3'- -CUUCCUgGAac-UCAUU----UG-CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 24461 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 25039 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 26271 0.72 0.941656
Target:  5'- -cGGGuggcggaauuaGCCU-GGGUGGAgGGGCCGGCa -3'
miRNA:   3'- cuUCC-----------UGGAaCUCAUUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 26430 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 27539 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 28117 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 29508 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 32141 0.66 0.997565
Target:  5'- cGGGGugCUgGGGUGgggGAUGGGCUcaGGCa -3'
miRNA:   3'- cUUCCugGAaCUCAU---UUGCCUGG--UCG- -5'
29151 5' -49.7 NC_006146.1 + 33097 0.67 0.99711
Target:  5'- --cGGACCggcgGAcccccgAAGCGGAuCCGGCg -3'
miRNA:   3'- cuuCCUGGaa--CUca----UUUGCCU-GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 33334 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33427 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33520 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33613 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33706 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33799 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33892 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.