miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 43236 0.72 0.92615
Target:  5'- --cGGACCUuugGGGUGccuCGGcGCCAGCg -3'
miRNA:   3'- cuuCCUGGAa--CUCAUuu-GCC-UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 72916 0.72 0.931576
Target:  5'- -----uCCUUGGGUGAGCuGGCCAGCc -3'
miRNA:   3'- cuuccuGGAACUCAUUUGcCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 137845 0.72 0.941656
Target:  5'- aGggGGGCUcgGGGUGggUGGGCguGUc -3'
miRNA:   3'- -CuuCCUGGaaCUCAUuuGCCUGguCG- -5'
29151 5' -49.7 NC_006146.1 + 41063 0.72 0.941656
Target:  5'- uGGGGGCCUcgGGGUGGAgGGagGCCAGg -3'
miRNA:   3'- cUUCCUGGAa-CUCAUUUgCC--UGGUCg -5'
29151 5' -49.7 NC_006146.1 + 26271 0.72 0.941656
Target:  5'- -cGGGuggcggaauuaGCCU-GGGUGGAgGGGCCGGCa -3'
miRNA:   3'- cuUCC-----------UGGAaCUCAUUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 44817 0.71 0.946314
Target:  5'- -uGGGACCUcu-GUAGG-GGGCCGGCg -3'
miRNA:   3'- cuUCCUGGAacuCAUUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 83670 0.71 0.946314
Target:  5'- -uAGGAUCUUGGGgauGAUGGcgucuuCCAGCa -3'
miRNA:   3'- cuUCCUGGAACUCau-UUGCCu-----GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 101661 0.71 0.954878
Target:  5'- --cGGACCUggcccUGGGgggAAACGGGCUacgGGCg -3'
miRNA:   3'- cuuCCUGGA-----ACUCa--UUUGCCUGG---UCG- -5'
29151 5' -49.7 NC_006146.1 + 29508 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 14118 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 26430 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 20274 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 23352 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 17196 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 16874 0.71 0.962466
Target:  5'- aAGGaGACCUUcaacGAGCGGGCCGGCu -3'
miRNA:   3'- cUUC-CUGGAAcucaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 4477 0.7 0.965906
Target:  5'- cGggGGGCUgguuacgUGucuuGUGgagauggcacuGGCGGGCCAGCg -3'
miRNA:   3'- -CuuCCUGGa------ACu---CAU-----------UUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 51162 0.7 0.96786
Target:  5'- aGAGGGcGCCgcugUGGGUGuggaagggggucuGCGGGCUGGCg -3'
miRNA:   3'- -CUUCC-UGGa---ACUCAUu------------UGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 113012 0.7 0.969117
Target:  5'- ---cGGCCUUGAGgcGAUGGAgCAGa -3'
miRNA:   3'- cuucCUGGAACUCauUUGCCUgGUCg -5'
29151 5' -49.7 NC_006146.1 + 33984 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 33892 0.7 0.974883
Target:  5'- -cAGGACC---GGgcAGCGGACCcGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.