miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 164553 1.13 0.00741
Target:  5'- cGAAGGACCUUGAGUAAACGGACCAGCu -3'
miRNA:   3'- -CUUCCUGGAACUCAUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 34914 0.77 0.70781
Target:  5'- -cAGGACC---GGgcAGCGGACCGGCa -3'
miRNA:   3'- cuUCCUGGaacUCauUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 51584 0.77 0.71815
Target:  5'- gGAGGGGCCcgGGGgagccAGAgGGGCCAGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCa----UUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 147726 0.76 0.758613
Target:  5'- -cGGGGCC-UGGGUAAuaGCGGGCCgcgAGCg -3'
miRNA:   3'- cuUCCUGGaACUCAUU--UGCCUGG---UCG- -5'
29151 5' -49.7 NC_006146.1 + 43270 0.76 0.768453
Target:  5'- --uGGACaa-GAGgcAGCGGGCCGGCg -3'
miRNA:   3'- cuuCCUGgaaCUCauUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 46959 0.76 0.787732
Target:  5'- cGAAGGACCUgccgGAGcUGAGgGGACCGu- -3'
miRNA:   3'- -CUUCCUGGAa---CUC-AUUUgCCUGGUcg -5'
29151 5' -49.7 NC_006146.1 + 2445 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 3377 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 582 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 1513 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 62457 0.74 0.858076
Target:  5'- --uGGACCUUG-GU--ACGGACgGGCa -3'
miRNA:   3'- cuuCCUGGAACuCAuuUGCCUGgUCG- -5'
29151 5' -49.7 NC_006146.1 + 11047 0.74 0.858076
Target:  5'- gGGAGGugUUUGGGUAcGACGGcuaCAGCg -3'
miRNA:   3'- -CUUCCugGAACUCAU-UUGCCug-GUCG- -5'
29151 5' -49.7 NC_006146.1 + 15227 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 18305 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 24461 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 27539 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 21383 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 68534 0.73 0.888239
Target:  5'- cGAGGACCcggagaccuUUGAGUGccCGGACCgcuGGCg -3'
miRNA:   3'- cUUCCUGG---------AACUCAUuuGCCUGG---UCG- -5'
29151 5' -49.7 NC_006146.1 + 83171 0.73 0.895186
Target:  5'- aGAGGGCCUUGAuuucaaGGugCAGCa -3'
miRNA:   3'- cUUCCUGGAACUcauuugCCugGUCG- -5'
29151 5' -49.7 NC_006146.1 + 117947 0.72 0.922772
Target:  5'- cGGAGGGCCaUGAacgGUAacgggauaggcggcgGACGaGGCCAGCg -3'
miRNA:   3'- -CUUCCUGGaACU---CAU---------------UUGC-CUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.