miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 164553 1.13 0.00741
Target:  5'- cGAAGGACCUUGAGUAAACGGACCAGCu -3'
miRNA:   3'- -CUUCCUGGAACUCAUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 4477 0.7 0.965906
Target:  5'- cGggGGGCUgguuacgUGucuuGUGgagauggcacuGGCGGGCCAGCg -3'
miRNA:   3'- -CuuCCUGGa------ACu---CAU-----------UUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167274 0.7 0.974883
Target:  5'- -cGGGGCCgcgcgUGGGgauggccggcgGGAgGGGCCGGCg -3'
miRNA:   3'- cuUCCUGGa----ACUCa----------UUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 90088 0.66 0.998587
Target:  5'- gGggGGAgCagugGAGgcAGCGGAgCAGg -3'
miRNA:   3'- -CuuCCUgGaa--CUCauUUGCCUgGUCg -5'
29151 5' -49.7 NC_006146.1 + 18305 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 21383 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 27539 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 68534 0.73 0.888239
Target:  5'- cGAGGACCcggagaccuUUGAGUGccCGGACCgcuGGCg -3'
miRNA:   3'- cUUCCUGG---------AACUCAUuuGCCUGG---UCG- -5'
29151 5' -49.7 NC_006146.1 + 14118 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 29508 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 20274 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 137845 0.72 0.941656
Target:  5'- aGggGGGCUcgGGGUGggUGGGCguGUc -3'
miRNA:   3'- -CuuCCUGGaaCUCAUuuGCCUGguCG- -5'
29151 5' -49.7 NC_006146.1 + 147726 0.76 0.758613
Target:  5'- -cGGGGCC-UGGGUAAuaGCGGGCCgcgAGCg -3'
miRNA:   3'- cuUCCUGGaACUCAUU--UGCCUGG---UCG- -5'
29151 5' -49.7 NC_006146.1 + 23352 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 43270 0.76 0.768453
Target:  5'- --uGGACaa-GAGgcAGCGGGCCGGCg -3'
miRNA:   3'- cuuCCUGgaaCUCauUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 43236 0.72 0.92615
Target:  5'- --cGGACCUuugGGGUGccuCGGcGCCAGCg -3'
miRNA:   3'- cuuCCUGGAa--CUCAUuu-GCC-UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 26430 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 126043 0.7 0.974883
Target:  5'- gGAGGGAcugggcucCCUUGGGUAggguaAACGGgcacgaggggcGCCGGCc -3'
miRNA:   3'- -CUUCCU--------GGAACUCAU-----UUGCC-----------UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 15227 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 24461 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.