miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 582 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 1441 0.67 0.99711
Target:  5'- -uGGGGCaCUggaAGUAAgacauACGGGCCGGUg -3'
miRNA:   3'- cuUCCUG-GAac-UCAUU-----UGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 1513 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 2445 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 3377 0.74 0.858076
Target:  5'- aGAGGGGCCggGGGc--GCGGcCCGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauuUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 4477 0.7 0.965906
Target:  5'- cGggGGGCUgguuacgUGucuuGUGgagauggcacuGGCGGGCCAGCg -3'
miRNA:   3'- -CuuCCUGGa------ACu---CAU-----------UUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 11047 0.74 0.858076
Target:  5'- gGGAGGugUUUGGGUAcGACGGcuaCAGCg -3'
miRNA:   3'- -CUUCCugGAACUCAU-UUGCCug-GUCG- -5'
29151 5' -49.7 NC_006146.1 + 12727 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 13083 0.68 0.990353
Target:  5'- -cGGGGCCagcgcggagGAGUAcuCGGACCuGGCc -3'
miRNA:   3'- cuUCCUGGaa-------CUCAUuuGCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 14027 0.68 0.991225
Target:  5'- cGGAGGGCaggGAGcAGGCGGgggcaggcgcaagcGCCGGCu -3'
miRNA:   3'- -CUUCCUGgaaCUCaUUUGCC--------------UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 14118 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 15227 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 15806 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 16874 0.71 0.962466
Target:  5'- aAGGaGACCUUcaacGAGCGGGCCGGCu -3'
miRNA:   3'- cUUC-CUGGAAcucaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 17196 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5'
29151 5' -49.7 NC_006146.1 + 17227 0.67 0.996587
Target:  5'- -cAGGACCgcuauGUGAA-GGACCAGg -3'
miRNA:   3'- cuUCCUGGaacu-CAUUUgCCUGGUCg -5'
29151 5' -49.7 NC_006146.1 + 18305 0.74 0.873622
Target:  5'- gGAGGGucuuCCUUGAagaaGaGGACGGGCCGGUa -3'
miRNA:   3'- -CUUCCu---GGAACU----CaUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 18884 0.66 0.998297
Target:  5'- -uGGGGCC---AGcAAGCGaGACCAGCc -3'
miRNA:   3'- cuUCCUGGaacUCaUUUGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 19848 0.66 0.997565
Target:  5'- cAGGGACCUcagcgugGAGau--CGuGACCGGCu -3'
miRNA:   3'- cUUCCUGGAa------CUCauuuGC-CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 20274 0.71 0.954878
Target:  5'- gGggGGACUUUaGGUGAcccuCGGGCCuGGCu -3'
miRNA:   3'- -CuuCCUGGAAcUCAUUu---GCCUGG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.