miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 170198 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 170070 0.7 0.974883
Target:  5'- -cGGGGCCgcgcgUGGGgauggccggcgGGAgGGGCCGGCg -3'
miRNA:   3'- cuUCCUGGa----ACUCa----------UUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169963 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169267 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169138 0.7 0.974883
Target:  5'- -cGGGGCCgcgcgUGGGgauggccggcgGGAgGGGCCGGCg -3'
miRNA:   3'- cuUCCUGGa----ACUCa----------UUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 169031 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 168335 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 168206 0.7 0.974883
Target:  5'- -cGGGGCCgcgcgUGGGgauggccggcgGGAgGGGCCGGCg -3'
miRNA:   3'- cuUCCUGGa----ACUCa----------UUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 168099 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167876 0.66 0.998297
Target:  5'- cGGAGGugCggUGAGguugcuccagGGAUGGAaaggccCCAGCa -3'
miRNA:   3'- -CUUCCugGa-ACUCa---------UUUGCCU------GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167403 0.68 0.992678
Target:  5'- -cGGGGCCg-GGGccuGGCGGggGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCau-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167274 0.7 0.974883
Target:  5'- -cGGGGCCgcgcgUGGGgauggccggcgGGAgGGGCCGGCg -3'
miRNA:   3'- cuUCCUGGa----ACUCa----------UUUgCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167167 0.68 0.990353
Target:  5'- -cAGGGCCUUcGG--GACGGgagGCCGGCg -3'
miRNA:   3'- cuUCCUGGAAcUCauUUGCC---UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 167009 0.66 0.997565
Target:  5'- uGGGGGCCUcGucGGUGGGCcucgccgaGACCAGCa -3'
miRNA:   3'- cUUCCUGGAaC--UCAUUUGc-------CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 166894 0.69 0.987484
Target:  5'- aGGAGGAgCgUGAGUGAAaaacagaGGAUgAGCu -3'
miRNA:   3'- -CUUCCUgGaACUCAUUUg------CCUGgUCG- -5'
29151 5' -49.7 NC_006146.1 + 166741 0.69 0.983998
Target:  5'- --uGGGCa-UGGGUuucGGACgGGACCAGCa -3'
miRNA:   3'- cuuCCUGgaACUCA---UUUG-CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 164553 1.13 0.00741
Target:  5'- cGAAGGACCUUGAGUAAACGGACCAGCu -3'
miRNA:   3'- -CUUCCUGGAACUCAUUUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 164521 0.67 0.995306
Target:  5'- aGAGGACC---GGUAccaAACGGACCccagGGCc -3'
miRNA:   3'- cUUCCUGGaacUCAU---UUGCCUGG----UCG- -5'
29151 5' -49.7 NC_006146.1 + 162860 0.67 0.995988
Target:  5'- -cAGGGCC--GGGUccAGCGGguGCCAGCg -3'
miRNA:   3'- cuUCCUGGaaCUCAu-UUGCC--UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 161024 0.67 0.995988
Target:  5'- ----cGCCUuugUGGGUGAGCGGGCCGu- -3'
miRNA:   3'- cuuccUGGA---ACUCAUUUGCCUGGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.