miRNA display CGI


Results 1 - 20 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29151 5' -49.7 NC_006146.1 + 14027 0.68 0.991225
Target:  5'- cGGAGGGCaggGAGcAGGCGGgggcaggcgcaagcGCCGGCu -3'
miRNA:   3'- -CUUCCUGgaaCUCaUUUGCC--------------UGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 33097 0.67 0.99711
Target:  5'- --cGGACCggcgGAcccccgAAGCGGAuCCGGCg -3'
miRNA:   3'- cuuCCUGGaa--CUca----UUUGCCU-GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 24351 0.67 0.99711
Target:  5'- gGGAGGAgCUacaAGUAGuggcGCaGGGCCAGCu -3'
miRNA:   3'- -CUUCCUgGAac-UCAUU----UG-CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 17227 0.67 0.996587
Target:  5'- -cAGGACCgcuauGUGAA-GGACCAGg -3'
miRNA:   3'- cuUCCUGGaacu-CAUUUgCCUGGUCg -5'
29151 5' -49.7 NC_006146.1 + 86500 0.67 0.995988
Target:  5'- --uGGGCCUUGAGgggcAGCuGGGCUugaggGGCa -3'
miRNA:   3'- cuuCCUGGAACUCau--UUG-CCUGG-----UCG- -5'
29151 5' -49.7 NC_006146.1 + 45058 0.67 0.995306
Target:  5'- --cGGGCCUUGGGcuuGauGACCGGUc -3'
miRNA:   3'- cuuCCUGGAACUCauuUgcCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 40490 0.67 0.994533
Target:  5'- aGAGGGGCCgcgaaAGgcAGCGGACuCuGCc -3'
miRNA:   3'- -CUUCCUGGaac--UCauUUGCCUG-GuCG- -5'
29151 5' -49.7 NC_006146.1 + 138889 0.68 0.994022
Target:  5'- --cGGACUggGAGUAGGCugaggugacgguacuGGACCuGCc -3'
miRNA:   3'- cuuCCUGGaaCUCAUUUG---------------CCUGGuCG- -5'
29151 5' -49.7 NC_006146.1 + 111750 0.68 0.99366
Target:  5'- -uGGGuggcguCCcUGAG---GCGGGCCAGCa -3'
miRNA:   3'- cuUCCu-----GGaACUCauuUGCCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 32141 0.66 0.997565
Target:  5'- cGGGGugCUgGGGUGgggGAUGGGCUcaGGCa -3'
miRNA:   3'- cUUCCugGAaCUCAU---UUGCCUGG--UCG- -5'
29151 5' -49.7 NC_006146.1 + 135971 0.66 0.997565
Target:  5'- cGGGGugCUgGGGUGgggGAUGGGCUcaGGCa -3'
miRNA:   3'- cUUCCugGAaCUCAU---UUGCCUGG--UCG- -5'
29151 5' -49.7 NC_006146.1 + 167009 0.66 0.997565
Target:  5'- uGGGGGCCUcGucGGUGGGCcucgccgaGACCAGCa -3'
miRNA:   3'- cUUCCUGGAaC--UCAUUUGc-------CUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 105865 0.66 0.998587
Target:  5'- cGAGGaaGCCgggGAGgcaagauAGCGG-CCAGCg -3'
miRNA:   3'- cUUCC--UGGaa-CUCau-----UUGCCuGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 137405 0.66 0.998587
Target:  5'- gGAGGGugCUgGGGUcccGgGGACCAcGCc -3'
miRNA:   3'- -CUUCCugGAaCUCAuu-UgCCUGGU-CG- -5'
29151 5' -49.7 NC_006146.1 + 167876 0.66 0.998297
Target:  5'- cGGAGGugCggUGAGguugcuccagGGAUGGAaaggccCCAGCa -3'
miRNA:   3'- -CUUCCugGa-ACUCa---------UUUGCCU------GGUCG- -5'
29151 5' -49.7 NC_006146.1 + 128097 0.66 0.998297
Target:  5'- gGAGGGGCC--GAGgcAGgGGACaauGGCg -3'
miRNA:   3'- -CUUCCUGGaaCUCauUUgCCUGg--UCG- -5'
29151 5' -49.7 NC_006146.1 + 52971 0.66 0.998297
Target:  5'- aGAAGG-CCgguAGUGcgcaGGCGGACCuGCc -3'
miRNA:   3'- -CUUCCuGGaacUCAU----UUGCCUGGuCG- -5'
29151 5' -49.7 NC_006146.1 + 130657 0.66 0.998297
Target:  5'- aGGAGGuucaGCCUcGcGUAGGCGGACgGuGCa -3'
miRNA:   3'- -CUUCC----UGGAaCuCAUUUGCCUGgU-CG- -5'
29151 5' -49.7 NC_006146.1 + 60473 0.66 0.997958
Target:  5'- cGGGGAgCggUGAG-AGGCcgggGGGCCAGCu -3'
miRNA:   3'- cUUCCUgGa-ACUCaUUUG----CCUGGUCG- -5'
29151 5' -49.7 NC_006146.1 + 19848 0.66 0.997565
Target:  5'- cAGGGACCUcagcgugGAGau--CGuGACCGGCu -3'
miRNA:   3'- cUUCCUGGAa------CUCauuuGC-CUGGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.