miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 145455 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 141674 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 150907 0.66 0.860719
Target:  5'- -----cCGGGGUcccuccggccgGCCU-GAUGGACCCg -3'
miRNA:   3'- cuacuaGCCCCA-----------CGGGuCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137529 0.76 0.309577
Target:  5'- --gGAgCGGGGcagcgGCCCGG-CGGACCCa -3'
miRNA:   3'- cuaCUaGCCCCa----CGGGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137651 0.76 0.309577
Target:  5'- --gGAgCGGGGcagcgGCCCGG-CGGACCCg -3'
miRNA:   3'- cuaCUaGCCCCa----CGGGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 15997 0.67 0.795827
Target:  5'- --aGggCGGacgcGGUcaGCCCGGGCGaGGCCCu -3'
miRNA:   3'- cuaCuaGCC----CCA--CGGGUCUGC-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 13258 0.68 0.768999
Target:  5'- -cUGGUCcaGGGGcUGgugcccaagaCCCAGGCGGugCCc -3'
miRNA:   3'- cuACUAG--CCCC-AC----------GGGUCUGCCugGG- -5'
29152 3' -58.5 NC_006146.1 + 71681 0.68 0.74114
Target:  5'- cGGUGGUCGGGcGcGCCgAGGcCGcGGCCUc -3'
miRNA:   3'- -CUACUAGCCC-CaCGGgUCU-GC-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 43941 0.68 0.74114
Target:  5'- --cGggCGGGGUcuaUCCAGACGcGCCCg -3'
miRNA:   3'- cuaCuaGCCCCAc--GGGUCUGCcUGGG- -5'
29152 3' -58.5 NC_006146.1 + 157766 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 151611 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 148533 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 143028 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 154687 0.67 0.820576
Target:  5'- --gGAgucCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUa--GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 50874 0.67 0.778067
Target:  5'- --cGcgCGGGGUcuguGCCCGGACuGGCgCg -3'
miRNA:   3'- cuaCuaGCCCCA----CGGGUCUGcCUGgG- -5'
29152 3' -58.5 NC_006146.1 + 161763 0.67 0.821406
Target:  5'- --aGGUCcgagGGGGcGCCUGGGCGGggGCCUg -3'
miRNA:   3'- cuaCUAG----CCCCaCGGGUCUGCC--UGGG- -5'
29152 3' -58.5 NC_006146.1 + 2137 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 1205 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 274 0.73 0.479304
Target:  5'- cGUGAg-GGGGaGCCCgggaagacccggGGGCGGGCCCg -3'
miRNA:   3'- cUACUagCCCCaCGGG------------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 140139 0.74 0.392472
Target:  5'- aGGUGGUggcgGGGGUGcCCCGGguacaguuuGCGGGCCCu -3'
miRNA:   3'- -CUACUAg---CCCCAC-GGGUC---------UGCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.