miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 33277 0.7 0.653638
Target:  5'- --gGGUgGGGGgugGCCCGGcUGGGCaCCg -3'
miRNA:   3'- cuaCUAgCCCCa--CGGGUCuGCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 137998 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 120690 0.67 0.813032
Target:  5'- ----cUCGcGGGUGCaCGGGCGGACgCu -3'
miRNA:   3'- cuacuAGC-CCCACGgGUCUGCCUGgG- -5'
29152 3' -58.5 NC_006146.1 + 66778 0.69 0.693034
Target:  5'- --aGA-CGGGGUGCgacCUGGAcacCGGGCCCa -3'
miRNA:   3'- cuaCUaGCCCCACG---GGUCU---GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 34168 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 44248 0.67 0.795827
Target:  5'- --cGggCGGcGGUGUCCAuugccccuGCGGGCCCc -3'
miRNA:   3'- cuaCuaGCC-CCACGGGUc-------UGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137719 0.75 0.368484
Target:  5'- -----cCGGGGUGCCCGGGCcuACCCg -3'
miRNA:   3'- cuacuaGCCCCACGGGUCUGccUGGG- -5'
29152 3' -58.5 NC_006146.1 + 164635 0.93 0.027451
Target:  5'- aGAUGAUCGGGGU-CgCCAGACGGACCCu -3'
miRNA:   3'- -CUACUAGCCCCAcG-GGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 163440 0.69 0.712478
Target:  5'- aGGUGAuugcucacUCGGGGUGCCCGGucuugcaGGuuCUg -3'
miRNA:   3'- -CUACU--------AGCCCCACGGGUCug-----CCugGG- -5'
29152 3' -58.5 NC_006146.1 + 154887 0.66 0.837664
Target:  5'- ---cGUCGGGGggcagggccucGCCCGGGCuGACCg -3'
miRNA:   3'- cuacUAGCCCCa----------CGGGUCUGcCUGGg -5'
29152 3' -58.5 NC_006146.1 + 48626 0.7 0.604082
Target:  5'- gGGUGccgUGGGGgcggGCuCCGGGCGGguGCCCa -3'
miRNA:   3'- -CUACua-GCCCCa---CG-GGUCUGCC--UGGG- -5'
29152 3' -58.5 NC_006146.1 + 52332 0.73 0.470185
Target:  5'- cGUGGgcCGGGGUGCCCGGgGCGGcguCCUu -3'
miRNA:   3'- cUACUa-GCCCCACGGGUC-UGCCu--GGG- -5'
29152 3' -58.5 NC_006146.1 + 38947 0.68 0.759816
Target:  5'- --cGGUCGaGGGUGgccuuggcaUCCGGGUGGGCCCc -3'
miRNA:   3'- cuaCUAGC-CCCAC---------GGGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 106290 0.66 0.82962
Target:  5'- -uUGcUCGGGuGUGUCCuGACaGGCCUc -3'
miRNA:   3'- cuACuAGCCC-CACGGGuCUGcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 154687 0.67 0.820576
Target:  5'- --gGAgucCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUa--GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 161763 0.67 0.821406
Target:  5'- --aGGUCcgagGGGGcGCCUGGGCGGggGCCUg -3'
miRNA:   3'- cuaCUAG----CCCCaCGGGUCUGCC--UGGG- -5'
29152 3' -58.5 NC_006146.1 + 148533 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 43632 0.66 0.860719
Target:  5'- aGUGGgcggCGGGGcguggccGCCUggggAGAgGGGCCCg -3'
miRNA:   3'- cUACUa---GCCCCa------CGGG----UCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 157766 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 151611 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.