Results 21 - 40 of 81 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29152 | 3' | -58.5 | NC_006146.1 | + | 40747 | 0.67 | 0.778067 |
Target: 5'- cGUGcUUGGGGcugGCCaCGGACguGGACCUg -3' miRNA: 3'- cUACuAGCCCCa--CGG-GUCUG--CCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 142545 | 0.67 | 0.795827 |
Target: 5'- aGGUGGUUGcGGUGCagccuaggCUAGGCGGAgCCu -3' miRNA: 3'- -CUACUAGCcCCACG--------GGUCUGCCUgGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 44248 | 0.67 | 0.795827 |
Target: 5'- --cGggCGGcGGUGUCCAuugccccuGCGGGCCCc -3' miRNA: 3'- cuaCuaGCC-CCACGGGUc-------UGCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 50874 | 0.67 | 0.778067 |
Target: 5'- --cGcgCGGGGUcuguGCCCGGACuGGCgCg -3' miRNA: 3'- cuaCuaGCCCCA----CGGGUCUGcCUGgG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 152262 | 0.67 | 0.804502 |
Target: 5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3' miRNA: 3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 158419 | 0.67 | 0.804502 |
Target: 5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3' miRNA: 3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 149184 | 0.67 | 0.804502 |
Target: 5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3' miRNA: 3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 146106 | 0.67 | 0.804502 |
Target: 5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3' miRNA: 3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 143028 | 0.67 | 0.804502 |
Target: 5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3' miRNA: 3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 15997 | 0.67 | 0.795827 |
Target: 5'- --aGggCGGacgcGGUcaGCCCGGGCGaGGCCCu -3' miRNA: 3'- cuaCuaGCC----CCA--CGGGUCUGC-CUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 52974 | 0.67 | 0.795827 |
Target: 5'- --aGGcCGGuaGUGCgCAGGCGGACCUg -3' miRNA: 3'- cuaCUaGCCc-CACGgGUCUGCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 154687 | 0.67 | 0.820576 |
Target: 5'- --gGAgucCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3' miRNA: 3'- cuaCUa--GCCCCAC-------------GGGUCU------GCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 161763 | 0.67 | 0.821406 |
Target: 5'- --aGGUCcgagGGGGcGCCUGGGCGGggGCCUg -3' miRNA: 3'- cuaCUAG----CCCCaCGGGUCUGCC--UGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 155340 | 0.67 | 0.804502 |
Target: 5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3' miRNA: 3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 38947 | 0.68 | 0.759816 |
Target: 5'- --cGGUCGaGGGUGgccuuggcaUCCGGGUGGGCCCc -3' miRNA: 3'- cuaCUAGC-CCCAC---------GGGUCUGCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 99061 | 0.68 | 0.731664 |
Target: 5'- gGGUG-UCGGcGGUGCCgUAGugguggaGGGCCCg -3' miRNA: 3'- -CUACuAGCC-CCACGG-GUCug-----CCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 44950 | 0.68 | 0.731664 |
Target: 5'- aGggGcgCGGGGagGCCCcGGgGGACUCg -3' miRNA: 3'- -CuaCuaGCCCCa-CGGGuCUgCCUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 13258 | 0.68 | 0.768999 |
Target: 5'- -cUGGUCcaGGGGcUGgugcccaagaCCCAGGCGGugCCc -3' miRNA: 3'- cuACUAG--CCCC-AC----------GGGUCUGCCugGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 43941 | 0.68 | 0.74114 |
Target: 5'- --cGggCGGGGUcuaUCCAGACGcGCCCg -3' miRNA: 3'- cuaCuaGCCCCAc--GGGUCUGCcUGGG- -5' |
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29152 | 3' | -58.5 | NC_006146.1 | + | 71681 | 0.68 | 0.74114 |
Target: 5'- cGGUGGUCGGGcGcGCCgAGGcCGcGGCCUc -3' miRNA: 3'- -CUACUAGCCC-CaCGGgUCU-GC-CUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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