miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 49474 0.71 0.588286
Target:  5'- aGAUGAUCGGGGcccugauguuggucaUGggcagacucuCCCGGACGuugaGGCCCg -3'
miRNA:   3'- -CUACUAGCCCC---------------AC----------GGGUCUGC----CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 50179 0.66 0.860719
Target:  5'- --cGAUgGGGGUGaucuCCCGGAUcaGGugCUg -3'
miRNA:   3'- cuaCUAgCCCCAC----GGGUCUG--CCugGG- -5'
29152 3' -58.5 NC_006146.1 + 50874 0.67 0.778067
Target:  5'- --cGcgCGGGGUcuguGCCCGGACuGGCgCg -3'
miRNA:   3'- cuaCuaGCCCCA----CGGGUCUGcCUGgG- -5'
29152 3' -58.5 NC_006146.1 + 51563 0.66 0.845533
Target:  5'- uGAUGAcccUGGGcGccGCCgGGAgGGGCCCg -3'
miRNA:   3'- -CUACUa--GCCC-Ca-CGGgUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 52332 0.73 0.470185
Target:  5'- cGUGGgcCGGGGUGCCCGGgGCGGcguCCUu -3'
miRNA:   3'- cUACUa-GCCCCACGGGUC-UGCCu--GGG- -5'
29152 3' -58.5 NC_006146.1 + 52974 0.67 0.795827
Target:  5'- --aGGcCGGuaGUGCgCAGGCGGACCUg -3'
miRNA:   3'- cuaCUaGCCc-CACGgGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 55039 0.72 0.488508
Target:  5'- uGggGGUCGGGGccggggccUGCCaCAGGCGGccguaucggACCCa -3'
miRNA:   3'- -CuaCUAGCCCC--------ACGG-GUCUGCC---------UGGG- -5'
29152 3' -58.5 NC_006146.1 + 55573 0.68 0.731664
Target:  5'- cGAUGAccgagucCGGGGUGCCgUAGGucUGGuCCCa -3'
miRNA:   3'- -CUACUa------GCCCCACGG-GUCU--GCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 66778 0.69 0.693034
Target:  5'- --aGA-CGGGGUGCgacCUGGAcacCGGGCCCa -3'
miRNA:   3'- cuaCUaGCCCCACG---GGUCU---GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 69997 0.69 0.702784
Target:  5'- --cGGUCGGGGacCCCAcGGCcGaGACCCa -3'
miRNA:   3'- cuaCUAGCCCCacGGGU-CUG-C-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 71681 0.68 0.74114
Target:  5'- cGGUGGUCGGGcGcGCCgAGGcCGcGGCCUc -3'
miRNA:   3'- -CUACUAGCCC-CaCGGgUCU-GC-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 83638 0.66 0.860719
Target:  5'- uGGUGG-CGGGG-GCUCu-GCGGGCCa -3'
miRNA:   3'- -CUACUaGCCCCaCGGGucUGCCUGGg -5'
29152 3' -58.5 NC_006146.1 + 91772 0.69 0.683237
Target:  5'- gGGUGccUGGGGUGCCguGcuggcacccGCGGGCCUu -3'
miRNA:   3'- -CUACuaGCCCCACGGguC---------UGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 99061 0.68 0.731664
Target:  5'- gGGUG-UCGGcGGUGCCgUAGugguggaGGGCCCg -3'
miRNA:   3'- -CUACuAGCC-CCACGG-GUCug-----CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 99567 0.68 0.74114
Target:  5'- --aGAUCGGGGU-CCaggagguagaAGACGGGCUUg -3'
miRNA:   3'- cuaCUAGCCCCAcGGg---------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 106290 0.66 0.82962
Target:  5'- -uUGcUCGGGuGUGUCCuGACaGGCCUc -3'
miRNA:   3'- cuACuAGCCC-CACGGGuCUGcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 113641 0.66 0.837664
Target:  5'- cGGUGcucCGGGGgaugGCCUugcuGAccaCGGGCCCg -3'
miRNA:   3'- -CUACua-GCCCCa---CGGGu---CU---GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 113661 0.69 0.683237
Target:  5'- uGAUGGUCGacgagaGGUgGCUCGGGCccGGGCCCg -3'
miRNA:   3'- -CUACUAGCc-----CCA-CGGGUCUG--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 113970 0.7 0.653638
Target:  5'- --aGAggGGGGUGCCCGG--GGGCuCCg -3'
miRNA:   3'- cuaCUagCCCCACGGGUCugCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 120690 0.67 0.813032
Target:  5'- ----cUCGcGGGUGCaCGGGCGGACgCu -3'
miRNA:   3'- cuacuAGC-CCCACGgGUCUGCCUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.