miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 274 0.73 0.479304
Target:  5'- cGUGAg-GGGGaGCCCgggaagacccggGGGCGGGCCCg -3'
miRNA:   3'- cUACUagCCCCaCGGG------------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 1205 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 2137 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 3069 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 12175 0.69 0.667482
Target:  5'- cGUGAucUCGGGG-GCCUcgggcuccuacaacgAGACGGACUUu -3'
miRNA:   3'- cUACU--AGCCCCaCGGG---------------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 13122 0.66 0.860719
Target:  5'- uGUGGaCGGGG-GCUCc--CGGGCCCa -3'
miRNA:   3'- cUACUaGCCCCaCGGGucuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 13258 0.68 0.768999
Target:  5'- -cUGGUCcaGGGGcUGgugcccaagaCCCAGGCGGugCCc -3'
miRNA:   3'- cuACUAG--CCCC-AC----------GGGUCUGCCugGG- -5'
29152 3' -58.5 NC_006146.1 + 14113 0.66 0.85322
Target:  5'- gGAUG-UCGGGGcUGCUgGcGGCGG-CCUa -3'
miRNA:   3'- -CUACuAGCCCC-ACGGgU-CUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 15997 0.67 0.795827
Target:  5'- --aGggCGGacgcGGUcaGCCCGGGCGaGGCCCu -3'
miRNA:   3'- cuaCuaGCC----CCA--CGGGUCUGC-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 33153 0.7 0.653638
Target:  5'- --gGGUgGGGGgugGCCCGGcUGGGCaCCg -3'
miRNA:   3'- cuaCUAgCCCCa--CGGGUCuGCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 33277 0.7 0.653638
Target:  5'- --gGGUgGGGGgugGCCCGGcUGGGCaCCg -3'
miRNA:   3'- cuaCUAgCCCCa--CGGGUCuGCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 34168 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 38947 0.68 0.759816
Target:  5'- --cGGUCGaGGGUGgccuuggcaUCCGGGUGGGCCCc -3'
miRNA:   3'- cuaCUAGC-CCCAC---------GGGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 40747 0.67 0.778067
Target:  5'- cGUGcUUGGGGcugGCCaCGGACguGGACCUg -3'
miRNA:   3'- cUACuAGCCCCa--CGG-GUCUG--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 43632 0.66 0.860719
Target:  5'- aGUGGgcggCGGGGcguggccGCCUggggAGAgGGGCCCg -3'
miRNA:   3'- cUACUa---GCCCCa------CGGG----UCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 43941 0.68 0.74114
Target:  5'- --cGggCGGGGUcuaUCCAGACGcGCCCg -3'
miRNA:   3'- cuaCuaGCCCCAc--GGGUCUGCcUGGG- -5'
29152 3' -58.5 NC_006146.1 + 44248 0.67 0.795827
Target:  5'- --cGggCGGcGGUGUCCAuugccccuGCGGGCCCc -3'
miRNA:   3'- cuaCuaGCC-CCACGGGUc-------UGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 44950 0.68 0.731664
Target:  5'- aGggGcgCGGGGagGCCCcGGgGGACUCg -3'
miRNA:   3'- -CuaCuaGCCCCa-CGGGuCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 48626 0.7 0.604082
Target:  5'- gGGUGccgUGGGGgcggGCuCCGGGCGGguGCCCa -3'
miRNA:   3'- -CUACua-GCCCCa---CG-GGUCUGCC--UGGG- -5'
29152 3' -58.5 NC_006146.1 + 49404 0.71 0.594202
Target:  5'- gGAUGuaggUGGGGUucuuggcgGCCCccacGAUGGACCCg -3'
miRNA:   3'- -CUACua--GCCCCA--------CGGGu---CUGCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.