miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 164635 0.93 0.027451
Target:  5'- aGAUGAUCGGGGU-CgCCAGACGGACCCu -3'
miRNA:   3'- -CUACUAGCCCCAcG-GGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137736 0.77 0.289414
Target:  5'- gGcgGcgCGGcGGUGCCCAGcCGGGCCa -3'
miRNA:   3'- -CuaCuaGCC-CCACGGGUCuGCCUGGg -5'
29152 3' -58.5 NC_006146.1 + 137486 0.76 0.30274
Target:  5'- --cGAgcggCGGcgcagcGGUGCCCAGGCGGGCCa -3'
miRNA:   3'- cuaCUa---GCC------CCACGGGUCUGCCUGGg -5'
29152 3' -58.5 NC_006146.1 + 137651 0.76 0.309577
Target:  5'- --gGAgCGGGGcagcgGCCCGG-CGGACCCg -3'
miRNA:   3'- cuaCUaGCCCCa----CGGGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137529 0.76 0.309577
Target:  5'- --gGAgCGGGGcagcgGCCCGG-CGGACCCa -3'
miRNA:   3'- cuaCUaGCCCCa----CGGGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137719 0.75 0.368484
Target:  5'- -----cCGGGGUGCCCGGGCcuACCCg -3'
miRNA:   3'- cuacuaGCCCCACGGGUCUGccUGGG- -5'
29152 3' -58.5 NC_006146.1 + 140139 0.74 0.392472
Target:  5'- aGGUGGUggcgGGGGUGcCCCGGguacaguuuGCGGGCCCu -3'
miRNA:   3'- -CUACUAg---CCCCAC-GGGUC---------UGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137998 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 34168 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 52332 0.73 0.470185
Target:  5'- cGUGGgcCGGGGUGCCCGGgGCGGcguCCUu -3'
miRNA:   3'- cUACUa-GCCCCACGGGUC-UGCCu--GGG- -5'
29152 3' -58.5 NC_006146.1 + 274 0.73 0.479304
Target:  5'- cGUGAg-GGGGaGCCCgggaagacccggGGGCGGGCCCg -3'
miRNA:   3'- cUACUagCCCCaCGGG------------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 55039 0.72 0.488508
Target:  5'- uGggGGUCGGGGccggggccUGCCaCAGGCGGccguaucggACCCa -3'
miRNA:   3'- -CuaCUAGCCCC--------ACGG-GUCUGCC---------UGGG- -5'
29152 3' -58.5 NC_006146.1 + 1205 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 2137 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 3069 0.71 0.584348
Target:  5'- cGUGAg-GGGGaGCCCGGGaaGACCCg -3'
miRNA:   3'- cUACUagCCCCaCGGGUCUgcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 49474 0.71 0.588286
Target:  5'- aGAUGAUCGGGGcccugauguuggucaUGggcagacucuCCCGGACGuugaGGCCCg -3'
miRNA:   3'- -CUACUAGCCCC---------------AC----------GGGUCUGC----CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 49404 0.71 0.594202
Target:  5'- gGAUGuaggUGGGGUucuuggcgGCCCccacGAUGGACCCg -3'
miRNA:   3'- -CUACua--GCCCCA--------CGGGu---CUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 48626 0.7 0.604082
Target:  5'- gGGUGccgUGGGGgcggGCuCCGGGCGGguGCCCa -3'
miRNA:   3'- -CUACua-GCCCCa---CG-GGUCUGCC--UGGG- -5'
29152 3' -58.5 NC_006146.1 + 131488 0.7 0.613982
Target:  5'- --gGGUCuGGGGUGCcagggaucgaCCGGGaaaGGGCCCa -3'
miRNA:   3'- cuaCUAG-CCCCACG----------GGUCUg--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 137608 0.7 0.653638
Target:  5'- --cGAgcggCGGcgcagcGGUGCCCAGcCGGGCCa -3'
miRNA:   3'- cuaCUa---GCC------CCACGGGUCuGCCUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.