miRNA display CGI


Results 1 - 20 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 164635 0.93 0.027451
Target:  5'- aGAUGAUCGGGGU-CgCCAGACGGACCCu -3'
miRNA:   3'- -CUACUAGCCCCAcG-GGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 66778 0.69 0.693034
Target:  5'- --aGA-CGGGGUGCgacCUGGAcacCGGGCCCa -3'
miRNA:   3'- cuaCUaGCCCCACG---GGUCU---GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 55573 0.68 0.731664
Target:  5'- cGAUGAccgagucCGGGGUGCCgUAGGucUGGuCCCa -3'
miRNA:   3'- -CUACUa------GCCCCACGG-GUCU--GCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 83638 0.66 0.860719
Target:  5'- uGGUGG-CGGGG-GCUCu-GCGGGCCa -3'
miRNA:   3'- -CUACUaGCCCCaCGGGucUGCCUGGg -5'
29152 3' -58.5 NC_006146.1 + 52332 0.73 0.470185
Target:  5'- cGUGGgcCGGGGUGCCCGGgGCGGcguCCUu -3'
miRNA:   3'- cUACUa-GCCCCACGGGUC-UGCCu--GGG- -5'
29152 3' -58.5 NC_006146.1 + 55039 0.72 0.488508
Target:  5'- uGggGGUCGGGGccggggccUGCCaCAGGCGGccguaucggACCCa -3'
miRNA:   3'- -CuaCUAGCCCC--------ACGG-GUCUGCC---------UGGG- -5'
29152 3' -58.5 NC_006146.1 + 48626 0.7 0.604082
Target:  5'- gGGUGccgUGGGGgcggGCuCCGGGCGGguGCCCa -3'
miRNA:   3'- -CUACua-GCCCCa---CG-GGUCUGCC--UGGG- -5'
29152 3' -58.5 NC_006146.1 + 131488 0.7 0.613982
Target:  5'- --gGGUCuGGGGUGCcagggaucgaCCGGGaaaGGGCCCa -3'
miRNA:   3'- cuaCUAG-CCCCACG----------GGUCUg--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 167874 0.69 0.663531
Target:  5'- --gGcgCGGGGgaGCCCcgGGGCGG-CCCg -3'
miRNA:   3'- cuaCuaGCCCCa-CGGG--UCUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 149924 0.69 0.690099
Target:  5'- aGAUGAcucguagccugcccUCGGGGUugaggggcGCCCAGGCguugggaguggGGGCCa -3'
miRNA:   3'- -CUACU--------------AGCCCCA--------CGGGUCUG-----------CCUGGg -5'
29152 3' -58.5 NC_006146.1 + 169738 0.69 0.663531
Target:  5'- --gGcgCGGGGgaGCCCcgGGGCGG-CCCg -3'
miRNA:   3'- cuaCuaGCCCCa-CGGG--UCUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 33277 0.7 0.653638
Target:  5'- --gGGUgGGGGgugGCCCGGcUGGGCaCCg -3'
miRNA:   3'- cuaCUAgCCCCa--CGGGUCuGCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 137719 0.75 0.368484
Target:  5'- -----cCGGGGUGCCCGGGCcuACCCg -3'
miRNA:   3'- cuacuaGCCCCACGGGUCUGccUGGG- -5'
29152 3' -58.5 NC_006146.1 + 143232 0.69 0.672414
Target:  5'- cGGUGAgcUCuGGGUGCcaagaaaCCAGGCuGGCCCg -3'
miRNA:   3'- -CUACU--AGcCCCACG-------GGUCUGcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 34168 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 33153 0.7 0.653638
Target:  5'- --gGGUgGGGGgugGCCCGGcUGGGCaCCg -3'
miRNA:   3'- cuaCUAgCCCCa--CGGGUCuGCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 113661 0.69 0.683237
Target:  5'- uGAUGGUCGacgagaGGUgGCUCGGGCccGGGCCCg -3'
miRNA:   3'- -CUACUAGCc-----CCA-CGGGUCUG--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 163440 0.69 0.712478
Target:  5'- aGGUGAuugcucacUCGGGGUGCCCGGucuugcaGGuuCUg -3'
miRNA:   3'- -CUACU--------AGCCCCACGGGUCug-----CCugGG- -5'
29152 3' -58.5 NC_006146.1 + 137998 0.74 0.434634
Target:  5'- gGGUGG--GGGGUGCgcccCCAGcCGGACCCu -3'
miRNA:   3'- -CUACUagCCCCACG----GGUCuGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 49404 0.71 0.594202
Target:  5'- gGAUGuaggUGGGGUucuuggcgGCCCccacGAUGGACCCg -3'
miRNA:   3'- -CUACua--GCCCCA--------CGGGu---CUGCCUGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.