miRNA display CGI


Results 41 - 60 of 81 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 44950 0.68 0.731664
Target:  5'- aGggGcgCGGGGagGCCCcGGgGGACUCg -3'
miRNA:   3'- -CuaCuaGCCCCa-CGGGuCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 55573 0.68 0.731664
Target:  5'- cGAUGAccgagucCGGGGUGCCgUAGGucUGGuCCCa -3'
miRNA:   3'- -CUACUa------GCCCCACGG-GUCU--GCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 163440 0.69 0.712478
Target:  5'- aGGUGAuugcucacUCGGGGUGCCCGGucuugcaGGuuCUg -3'
miRNA:   3'- -CUACU--------AGCCCCACGGGUCug-----CCugGG- -5'
29152 3' -58.5 NC_006146.1 + 148533 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 142377 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 145455 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 157766 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 151611 0.69 0.711511
Target:  5'- --aGGUcCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUA-GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 69997 0.69 0.702784
Target:  5'- --cGGUCGGGGacCCCAcGGCcGaGACCCa -3'
miRNA:   3'- cuaCUAGCCCCacGGGU-CUG-C-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 66778 0.69 0.693034
Target:  5'- --aGA-CGGGGUGCgacCUGGAcacCGGGCCCa -3'
miRNA:   3'- cuaCUaGCCCCACG---GGUCU---GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 149924 0.69 0.690099
Target:  5'- aGAUGAcucguagccugcccUCGGGGUugaggggcGCCCAGGCguugggaguggGGGCCa -3'
miRNA:   3'- -CUACU--------------AGCCCCA--------CGGGUCUG-----------CCUGGg -5'
29152 3' -58.5 NC_006146.1 + 113661 0.69 0.683237
Target:  5'- uGAUGGUCGacgagaGGUgGCUCGGGCccGGGCCCg -3'
miRNA:   3'- -CUACUAGCc-----CCA-CGGGUCUG--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 91772 0.69 0.683237
Target:  5'- gGGUGccUGGGGUGCCguGcuggcacccGCGGGCCUu -3'
miRNA:   3'- -CUACuaGCCCCACGGguC---------UGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 143232 0.69 0.672414
Target:  5'- cGGUGAgcUCuGGGUGCcaagaaaCCAGGCuGGCCCg -3'
miRNA:   3'- -CUACU--AGcCCCACG-------GGUCUGcCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 12175 0.69 0.667482
Target:  5'- cGUGAucUCGGGG-GCCUcgggcuccuacaacgAGACGGACUUu -3'
miRNA:   3'- cUACU--AGCCCCaCGGG---------------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 167874 0.69 0.663531
Target:  5'- --gGcgCGGGGgaGCCCcgGGGCGG-CCCg -3'
miRNA:   3'- cuaCuaGCCCCa-CGGG--UCUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 168806 0.69 0.663531
Target:  5'- --gGcgCGGGGgaGCCCcgGGGCGG-CCCg -3'
miRNA:   3'- cuaCuaGCCCCa-CGGG--UCUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 169738 0.69 0.663531
Target:  5'- --gGcgCGGGGgaGCCCcgGGGCGG-CCCg -3'
miRNA:   3'- cuaCuaGCCCCa-CGGG--UCUGCCuGGG- -5'
29152 3' -58.5 NC_006146.1 + 113970 0.7 0.653638
Target:  5'- --aGAggGGGGUGCCCGG--GGGCuCCg -3'
miRNA:   3'- cuaCUagCCCCACGGGUCugCCUG-GG- -5'
29152 3' -58.5 NC_006146.1 + 33153 0.7 0.653638
Target:  5'- --gGGUgGGGGgugGCCCGGcUGGGCaCCg -3'
miRNA:   3'- cuaCUAgCCCCa--CGGGUCuGCCUG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.