miRNA display CGI


Results 21 - 40 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 3' -58.5 NC_006146.1 + 154687 0.67 0.820576
Target:  5'- --gGAgucCGGGGUGuugagccugcugcCCCAGGagaggcCGGACCCc -3'
miRNA:   3'- cuaCUa--GCCCCAC-------------GGGUCU------GCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 120690 0.67 0.813032
Target:  5'- ----cUCGcGGGUGCaCGGGCGGACgCu -3'
miRNA:   3'- cuacuAGC-CCCACGgGUCUGCCUGgG- -5'
29152 3' -58.5 NC_006146.1 + 143028 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 155340 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 149184 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 152262 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 146106 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 158419 0.67 0.804502
Target:  5'- --gGAU-GGGGaagccggaGUCCAGAgGGGCCCg -3'
miRNA:   3'- cuaCUAgCCCCa-------CGGGUCUgCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 15997 0.67 0.795827
Target:  5'- --aGggCGGacgcGGUcaGCCCGGGCGaGGCCCu -3'
miRNA:   3'- cuaCuaGCC----CCA--CGGGUCUGC-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 52974 0.67 0.795827
Target:  5'- --aGGcCGGuaGUGCgCAGGCGGACCUg -3'
miRNA:   3'- cuaCUaGCCc-CACGgGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 142545 0.67 0.795827
Target:  5'- aGGUGGUUGcGGUGCagccuaggCUAGGCGGAgCCu -3'
miRNA:   3'- -CUACUAGCcCCACG--------GGUCUGCCUgGG- -5'
29152 3' -58.5 NC_006146.1 + 44248 0.67 0.795827
Target:  5'- --cGggCGGcGGUGUCCAuugccccuGCGGGCCCc -3'
miRNA:   3'- cuaCuaGCC-CCACGGGUc-------UGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 50874 0.67 0.778067
Target:  5'- --cGcgCGGGGUcuguGCCCGGACuGGCgCg -3'
miRNA:   3'- cuaCuaGCCCCA----CGGGUCUGcCUGgG- -5'
29152 3' -58.5 NC_006146.1 + 40747 0.67 0.778067
Target:  5'- cGUGcUUGGGGcugGCCaCGGACguGGACCUg -3'
miRNA:   3'- cUACuAGCCCCa--CGG-GUCUG--CCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 13258 0.68 0.768999
Target:  5'- -cUGGUCcaGGGGcUGgugcccaagaCCCAGGCGGugCCc -3'
miRNA:   3'- cuACUAG--CCCC-AC----------GGGUCUGCCugGG- -5'
29152 3' -58.5 NC_006146.1 + 38947 0.68 0.759816
Target:  5'- --cGGUCGaGGGUGgccuuggcaUCCGGGUGGGCCCc -3'
miRNA:   3'- cuaCUAGC-CCCAC---------GGGUCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 99567 0.68 0.74114
Target:  5'- --aGAUCGGGGU-CCaggagguagaAGACGGGCUUg -3'
miRNA:   3'- cuaCUAGCCCCAcGGg---------UCUGCCUGGG- -5'
29152 3' -58.5 NC_006146.1 + 43941 0.68 0.74114
Target:  5'- --cGggCGGGGUcuaUCCAGACGcGCCCg -3'
miRNA:   3'- cuaCuaGCCCCAc--GGGUCUGCcUGGG- -5'
29152 3' -58.5 NC_006146.1 + 71681 0.68 0.74114
Target:  5'- cGGUGGUCGGGcGcGCCgAGGcCGcGGCCUc -3'
miRNA:   3'- -CUACUAGCCC-CaCGGgUCU-GC-CUGGG- -5'
29152 3' -58.5 NC_006146.1 + 44950 0.68 0.731664
Target:  5'- aGggGcgCGGGGagGCCCcGGgGGACUCg -3'
miRNA:   3'- -CuaCuaGCCCCa-CGGGuCUgCCUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.