miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 108975 0.67 0.761653
Target:  5'- cAGGGCCC---UGGAgCCCCUGauggC-CCg -3'
miRNA:   3'- aUCCCGGGcuuACCU-GGGGACa---GaGG- -5'
29152 5' -58.9 NC_006146.1 + 109422 0.67 0.761653
Target:  5'- cAGGGCCCGuuUGG-CCCC---CUCa -3'
miRNA:   3'- aUCCCGGGCuuACCuGGGGacaGAGg -5'
29152 5' -58.9 NC_006146.1 + 137778 0.67 0.75232
Target:  5'- --cGGUCCGggUGGGCCUg-GUCcgCCg -3'
miRNA:   3'- aucCCGGGCuuACCUGGGgaCAGa-GG- -5'
29152 5' -58.9 NC_006146.1 + 42897 0.67 0.742886
Target:  5'- -cGGGCCgaCGcuaGGGCCUCUGUC-CCg -3'
miRNA:   3'- auCCCGG--GCuuaCCUGGGGACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 69211 0.67 0.742886
Target:  5'- -uGGGCuuGGGcGGAgaccguCCUCUGUCUCUu -3'
miRNA:   3'- auCCCGggCUUaCCU------GGGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 137237 0.67 0.742886
Target:  5'- gGGGGCCUGGGgucccggGGAccacaCCCCUccCUCCc -3'
miRNA:   3'- aUCCCGGGCUUa------CCU-----GGGGAcaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 50014 0.67 0.742886
Target:  5'- gGGGGCaccaCCGAAgcagaagGGGCCCC-GUaCUCUa -3'
miRNA:   3'- aUCCCG----GGCUUa------CCUGGGGaCA-GAGG- -5'
29152 5' -58.9 NC_006146.1 + 137050 0.67 0.742886
Target:  5'- gGGGGCCUGGGguuccggGGAccacaCCCCUccCUCCc -3'
miRNA:   3'- aUCCCGGGCUUa------CCU-----GGGGAcaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 100069 0.67 0.733359
Target:  5'- -cGGGCCCGcuUGG-CCCUUGgCcCCa -3'
miRNA:   3'- auCCCGGGCuuACCuGGGGACaGaGG- -5'
29152 5' -58.9 NC_006146.1 + 54575 0.68 0.723749
Target:  5'- -uGGGCauGAucagGGACCUCUGUgcCUCCu -3'
miRNA:   3'- auCCCGggCUua--CCUGGGGACA--GAGG- -5'
29152 5' -58.9 NC_006146.1 + 50731 0.68 0.714064
Target:  5'- gAGGGCCCGGucgGGGuaCgUGUgUCCg -3'
miRNA:   3'- aUCCCGGGCUua-CCUggGgACAgAGG- -5'
29152 5' -58.9 NC_006146.1 + 126815 0.68 0.714064
Target:  5'- --cGGCCCGAgGUGGAaccaCCCCaGUC-CCg -3'
miRNA:   3'- aucCCGGGCU-UACCU----GGGGaCAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 150466 0.68 0.714064
Target:  5'- aGGGGCUgGAugacaGUGGcCCCCUGguagCCg -3'
miRNA:   3'- aUCCCGGgCU-----UACCuGGGGACaga-GG- -5'
29152 5' -58.9 NC_006146.1 + 154997 0.68 0.704313
Target:  5'- -cGGGUCCGGccgccggaGGGCucuaaCCCUGUCUCUg -3'
miRNA:   3'- auCCCGGGCUua------CCUG-----GGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 151919 0.68 0.704313
Target:  5'- -cGGGUCCGGccgccggaGGGCucuaaCCCUGUCUCUg -3'
miRNA:   3'- auCCCGGGCUua------CCUG-----GGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 156078 0.68 0.704313
Target:  5'- -cGGGCCCGAGaccGugCCCUc-CUCCg -3'
miRNA:   3'- auCCCGGGCUUac-CugGGGAcaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 148841 0.68 0.704313
Target:  5'- -cGGGUCCGGccgccggaGGGCucuaaCCCUGUCUCUg -3'
miRNA:   3'- auCCCGGGCUua------CCUG-----GGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 145763 0.68 0.704313
Target:  5'- -cGGGUCCGGccgccggaGGGCucuaaCCCUGUCUCUg -3'
miRNA:   3'- auCCCGGGCUua------CCUG-----GGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 158076 0.68 0.704313
Target:  5'- -cGGGUCCGGccgccggaGGGCucuaaCCCUGUCUCUg -3'
miRNA:   3'- auCCCGGGCUua------CCUG-----GGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 28769 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.