miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 7929 0.66 0.806512
Target:  5'- gGGGGaCCCGGGaaagGGGCgCCCgccaaCUCCg -3'
miRNA:   3'- aUCCC-GGGCUUa---CCUG-GGGaca--GAGG- -5'
29152 5' -58.9 NC_006146.1 + 168743 0.66 0.797809
Target:  5'- -cGGGCgCGcGUGGcccGCCCCcggGUCUUCc -3'
miRNA:   3'- auCCCGgGCuUACC---UGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 167811 0.66 0.797809
Target:  5'- -cGGGCgCGcGUGGcccGCCCCcggGUCUUCc -3'
miRNA:   3'- auCCCGgGCuUACC---UGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 33249 0.66 0.797809
Target:  5'- -cGGGUCCGcc-GGGCCgCUGccccgCUCCg -3'
miRNA:   3'- auCCCGGGCuuaCCUGGgGACa----GAGG- -5'
29152 5' -58.9 NC_006146.1 + 52412 0.66 0.797809
Target:  5'- gGGGGCCgucaaGAccGUGG-CCUCUGccCUCCa -3'
miRNA:   3'- aUCCCGGg----CU--UACCuGGGGACa-GAGG- -5'
29152 5' -58.9 NC_006146.1 + 169675 0.66 0.797809
Target:  5'- -cGGGCgCGcGUGGcccGCCCCcggGUCUUCc -3'
miRNA:   3'- auCCCGgGCuUACC---UGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 39322 0.66 0.788963
Target:  5'- -uGGGCUCGGcUGGccuCCCCgggaaUCUCCu -3'
miRNA:   3'- auCCCGGGCUuACCu--GGGGac---AGAGG- -5'
29152 5' -58.9 NC_006146.1 + 101977 0.66 0.788963
Target:  5'- -uGGGCCCa----GGCCCCgGUCUCg -3'
miRNA:   3'- auCCCGGGcuuacCUGGGGaCAGAGg -5'
29152 5' -58.9 NC_006146.1 + 170529 0.66 0.788963
Target:  5'- cGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- aUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 168574 0.66 0.787178
Target:  5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 170437 0.66 0.787178
Target:  5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 169506 0.66 0.787178
Target:  5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 89197 0.67 0.779983
Target:  5'- -uGGGCCCGccacuggGGAcuuCCCCagaUGUUUCCc -3'
miRNA:   3'- auCCCGGGCuua----CCU---GGGG---ACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 15046 0.67 0.779983
Target:  5'- cAGGGCCCGcc-GGGCCUgcgaggaggcaCUGgcgggggCUCCg -3'
miRNA:   3'- aUCCCGGGCuuaCCUGGG-----------GACa------GAGG- -5'
29152 5' -58.9 NC_006146.1 + 31842 0.67 0.779983
Target:  5'- cAGGGCCCGuAUGGugGCCgCCaGUUacccguUCCa -3'
miRNA:   3'- aUCCCGGGCuUACC--UGG-GGaCAG------AGG- -5'
29152 5' -58.9 NC_006146.1 + 167732 0.67 0.770877
Target:  5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 169597 0.67 0.770877
Target:  5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 168664 0.67 0.770877
Target:  5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 120983 0.67 0.770877
Target:  5'- -cGGGaCCGAGUGG-CCUCggcgGcCUCCg -3'
miRNA:   3'- auCCCgGGCUUACCuGGGGa---CaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 108975 0.67 0.761653
Target:  5'- cAGGGCCC---UGGAgCCCCUGauggC-CCg -3'
miRNA:   3'- aUCCCGGGcuuACCU-GGGGACa---GaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.