Results 21 - 40 of 155 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 151477 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 148399 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 145321 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 142243 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 88827 | 0.66 | 0.815064 |
Target: 5'- -uGGGCCUGA--GGcUCCCUGUaUCCc -3' miRNA: 3'- auCCCGGGCUuaCCuGGGGACAgAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 116293 | 0.66 | 0.815064 |
Target: 5'- gAGGcGgCCGGAUGGcGCCCCcgcgGUCcucUCCc -3' miRNA: 3'- aUCC-CgGGCUUACC-UGGGGa---CAG---AGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 50901 | 0.66 | 0.814216 |
Target: 5'- -cGGGUgCGGccUGGGCCUCcgugcccaagaugUGUCUCCg -3' miRNA: 3'- auCCCGgGCUu-ACCUGGGG-------------ACAGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 129582 | 0.66 | 0.806512 |
Target: 5'- uUGGGGCgCGAAacagggagGGACgCCaUGcCUCCg -3' miRNA: 3'- -AUCCCGgGCUUa-------CCUGgGG-ACaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 7929 | 0.66 | 0.806512 |
Target: 5'- gGGGGaCCCGGGaaagGGGCgCCCgccaaCUCCg -3' miRNA: 3'- aUCCC-GGGCUUa---CCUG-GGGaca--GAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 52412 | 0.66 | 0.797809 |
Target: 5'- gGGGGCCgucaaGAccGUGG-CCUCUGccCUCCa -3' miRNA: 3'- aUCCCGGg----CU--UACCuGGGGACa-GAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 101977 | 0.66 | 0.788963 |
Target: 5'- -uGGGCCCa----GGCCCCgGUCUCg -3' miRNA: 3'- auCCCGGGcuuacCUGGGGaCAGAGg -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 137986 | 0.66 | 0.831687 |
Target: 5'- gGGGGCCCGGcgGGguggggggugcGCCCCcag--CCg -3' miRNA: 3'- aUCCCGGGCUuaCC-----------UGGGGacagaGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 31842 | 0.67 | 0.779983 |
Target: 5'- cAGGGCCCGuAUGGugGCCgCCaGUUacccguUCCa -3' miRNA: 3'- aUCCCGGGCuUACC--UGG-GGaCAG------AGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 167732 | 0.67 | 0.770877 |
Target: 5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3' miRNA: 3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 109422 | 0.67 | 0.761653 |
Target: 5'- cAGGGCCCGuuUGG-CCCC---CUCa -3' miRNA: 3'- aUCCCGGGCuuACCuGGGGacaGAGg -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 89197 | 0.67 | 0.779983 |
Target: 5'- -uGGGCCCGccacuggGGAcuuCCCCagaUGUUUCCc -3' miRNA: 3'- auCCCGGGCuua----CCU---GGGG---ACAGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 120983 | 0.67 | 0.770877 |
Target: 5'- -cGGGaCCGAGUGG-CCUCggcgGcCUCCg -3' miRNA: 3'- auCCCgGGCUUACCuGGGGa---CaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 100069 | 0.67 | 0.733359 |
Target: 5'- -cGGGCCCGcuUGG-CCCUUGgCcCCa -3' miRNA: 3'- auCCCGGGCuuACCuGGGGACaGaGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 137050 | 0.67 | 0.742886 |
Target: 5'- gGGGGCCUGGGguuccggGGAccacaCCCCUccCUCCc -3' miRNA: 3'- aUCCCGGGCUUa------CCU-----GGGGAcaGAGG- -5' |
|||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 137237 | 0.67 | 0.742886 |
Target: 5'- gGGGGCCUGGGgucccggGGAccacaCCCCUccCUCCc -3' miRNA: 3'- aUCCCGGGCUUa------CCU-----GGGGAcaGAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home