miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 38952 0.68 0.674743
Target:  5'- gAGGGUggccuuggcauCCGggUGGGCCCCcagacUCUCg -3'
miRNA:   3'- aUCCCG-----------GGCuuACCUGGGGac---AGAGg -5'
29152 5' -58.9 NC_006146.1 + 39056 0.7 0.604948
Target:  5'- aGGGGCCCuguGAAUGGuCgCCgGcCUCCg -3'
miRNA:   3'- aUCCCGGG---CUUACCuGgGGaCaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 39322 0.66 0.788963
Target:  5'- -uGGGCUCGGcUGGccuCCCCgggaaUCUCCu -3'
miRNA:   3'- auCCCGGGCUuACCu--GGGGac---AGAGG- -5'
29152 5' -58.9 NC_006146.1 + 41357 0.71 0.536052
Target:  5'- cAGGGCCUGGcgGUGGugGCCguggcUCUGUCUCUg -3'
miRNA:   3'- aUCCCGGGCU--UACC--UGG-----GGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 42897 0.67 0.742886
Target:  5'- -cGGGCCgaCGcuaGGGCCUCUGUC-CCg -3'
miRNA:   3'- auCCCGG--GCuuaCCUGGGGACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 43459 0.7 0.575179
Target:  5'- cAGGGUCCGAAggacgGGACCCaCUGguggaCguugCCg -3'
miRNA:   3'- aUCCCGGGCUUa----CCUGGG-GACa----Ga---GG- -5'
29152 5' -58.9 NC_006146.1 + 43772 0.73 0.400145
Target:  5'- -uGGGCCgcaGAggGGACCaCCagGUCUCCg -3'
miRNA:   3'- auCCCGGg--CUuaCCUGG-GGa-CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 44969 0.66 0.821792
Target:  5'- gGGGGaCUCGAccgcgguggccGGACCCUUcUCUCCa -3'
miRNA:   3'- aUCCC-GGGCUua---------CCUGGGGAcAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 45530 0.69 0.623902
Target:  5'- gGGGGCCUGGGccuccuUGGGCuuggccgCCCUGgcCUCCg -3'
miRNA:   3'- aUCCCGGGCUU------ACCUG-------GGGACa-GAGG- -5'
29152 5' -58.9 NC_006146.1 + 46180 0.7 0.555515
Target:  5'- gUGGGGCCaGAGaGcGGCCCgaGUCUCUa -3'
miRNA:   3'- -AUCCCGGgCUUaC-CUGGGgaCAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 50014 0.67 0.742886
Target:  5'- gGGGGCaccaCCGAAgcagaagGGGCCCC-GUaCUCUa -3'
miRNA:   3'- aUCCCG----GGCUUa------CCUGGGGaCA-GAGG- -5'
29152 5' -58.9 NC_006146.1 + 50547 0.73 0.443105
Target:  5'- cAGGuCCCGggUGGGCaCCUgcagGUUUCCa -3'
miRNA:   3'- aUCCcGGGCuuACCUG-GGGa---CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 50731 0.68 0.714064
Target:  5'- gAGGGCCCGGucgGGGuaCgUGUgUCCg -3'
miRNA:   3'- aUCCCGGGCUua-CCUggGgACAgAGG- -5'
29152 5' -58.9 NC_006146.1 + 50901 0.66 0.814216
Target:  5'- -cGGGUgCGGccUGGGCCUCcgugcccaagaugUGUCUCCg -3'
miRNA:   3'- auCCCGgGCUu-ACCUGGGG-------------ACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 52412 0.66 0.797809
Target:  5'- gGGGGCCgucaaGAccGUGG-CCUCUGccCUCCa -3'
miRNA:   3'- aUCCCGGg----CU--UACCuGGGGACa-GAGG- -5'
29152 5' -58.9 NC_006146.1 + 54575 0.68 0.723749
Target:  5'- -uGGGCauGAucagGGACCUCUGUgcCUCCu -3'
miRNA:   3'- auCCCGggCUua--CCUGGGGACA--GAGG- -5'
29152 5' -58.9 NC_006146.1 + 57643 0.73 0.400145
Target:  5'- aAGGGCCacaaGuuUGGcguGCCCCUGUCUUa -3'
miRNA:   3'- aUCCCGGg---CuuACC---UGGGGACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 60806 0.7 0.594997
Target:  5'- cAGGGCCUGGuccGGACCgUUGUCaaCCa -3'
miRNA:   3'- aUCCCGGGCUua-CCUGGgGACAGa-GG- -5'
29152 5' -58.9 NC_006146.1 + 60897 0.72 0.488544
Target:  5'- cUGGGGCCC-AGUGGAUCCaggagCUGUUUCg -3'
miRNA:   3'- -AUCCCGGGcUUACCUGGG-----GACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 61498 0.7 0.585072
Target:  5'- cAGGGCuCCGAGgaGGCCCCUGcCgCCc -3'
miRNA:   3'- aUCCCG-GGCUUacCUGGGGACaGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.