Results 21 - 40 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 137041 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 136762 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 135926 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 135276 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 137599 | 0.7 | 0.575179 |
Target: 5'- -cGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- auCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 137506 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 136577 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 135183 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 137413 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 43772 | 0.73 | 0.400145 |
Target: 5'- -uGGGCCgcaGAggGGACCaCCagGUCUCCg -3' miRNA: 3'- auCCCGGg--CUuaCCUGG-GGa-CAGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 136670 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 137134 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 136298 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 136019 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 135648 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 135369 | 0.73 | 0.425605 |
Target: 5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3' miRNA: 3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 164251 | 0.69 | 0.614918 |
Target: 5'- gUGGGGCCUG-GUGGGCCaCCUccCUCg -3' miRNA: 3'- -AUCCCGGGCuUACCUGG-GGAcaGAGg -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 61498 | 0.7 | 0.585072 |
Target: 5'- cAGGGCuCCGAGgaGGCCCCUGcCgCCc -3' miRNA: 3'- aUCCCG-GGCUUacCUGGGGACaGaGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 41357 | 0.71 | 0.536052 |
Target: 5'- cAGGGCCUGGcgGUGGugGCCguggcUCUGUCUCUg -3' miRNA: 3'- aUCCCGGGCU--UACC--UGG-----GGACAGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 50547 | 0.73 | 0.443105 |
Target: 5'- cAGGuCCCGggUGGGCaCCUgcagGUUUCCa -3' miRNA: 3'- aUCCcGGGCuuACCUG-GGGa---CAGAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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