miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 164670 1.09 0.001616
Target:  5'- aAGGGCCCGAAUGGACCCCUGUCUCCa -3'
miRNA:   3'- aUCCCGGGCUUACCUGGGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 136577 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 136762 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 137986 0.66 0.831687
Target:  5'- gGGGGCCCGGcgGGguggggggugcGCCCCcag--CCg -3'
miRNA:   3'- aUCCCGGGCUuaCC-----------UGGGGacagaGG- -5'
29152 5' -58.9 NC_006146.1 + 135369 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135462 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135648 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135740 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 136019 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 136484 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 136205 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135926 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 43772 0.73 0.400145
Target:  5'- -uGGGCCgcaGAggGGACCaCCagGUCUCCg -3'
miRNA:   3'- auCCCGGg--CUuaCCUGG-GGa-CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 136298 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135183 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135833 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 136391 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 136670 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135276 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5'
29152 5' -58.9 NC_006146.1 + 135555 0.73 0.425605
Target:  5'- cGGGGCCgGGGgccgGGuGCCCCUGggUCCg -3'
miRNA:   3'- aUCCCGGgCUUa---CC-UGGGGACagAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.