Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29152 | 5' | -58.9 | NC_006146.1 | + | 118777 | 0.66 | 0.831687 |
Target: 5'- gUGGGGCCCGAGcUGGugUCCa------ -3' miRNA: 3'- -AUCCCGGGCUU-ACCugGGGacagagg -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 52412 | 0.66 | 0.797809 |
Target: 5'- gGGGGCCgucaaGAccGUGG-CCUCUGccCUCCa -3' miRNA: 3'- aUCCCGGg----CU--UACCuGGGGACa-GAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 101977 | 0.66 | 0.788963 |
Target: 5'- -uGGGCCCa----GGCCCCgGUCUCg -3' miRNA: 3'- auCCCGGGcuuacCUGGGGaCAGAGg -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 168574 | 0.66 | 0.787178 |
Target: 5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3' miRNA: 3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 169506 | 0.66 | 0.787178 |
Target: 5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3' miRNA: 3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 170437 | 0.66 | 0.787178 |
Target: 5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3' miRNA: 3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 39322 | 0.66 | 0.788963 |
Target: 5'- -uGGGCUCGGcUGGccuCCCCgggaaUCUCCu -3' miRNA: 3'- auCCCGGGCUuACCu--GGGGac---AGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 170529 | 0.66 | 0.788963 |
Target: 5'- cGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3' miRNA: 3'- aUCCCGGGCUuaCCUGgG-----GACAGaGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 33249 | 0.66 | 0.797809 |
Target: 5'- -cGGGUCCGcc-GGGCCgCUGccccgCUCCg -3' miRNA: 3'- auCCCGGGCuuaCCUGGgGACa----GAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 7929 | 0.66 | 0.806512 |
Target: 5'- gGGGGaCCCGGGaaagGGGCgCCCgccaaCUCCg -3' miRNA: 3'- aUCCC-GGGCUUa---CCUG-GGGaca--GAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 129582 | 0.66 | 0.806512 |
Target: 5'- uUGGGGCgCGAAacagggagGGACgCCaUGcCUCCg -3' miRNA: 3'- -AUCCCGgGCUUa-------CCUGgGG-ACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 50901 | 0.66 | 0.814216 |
Target: 5'- -cGGGUgCGGccUGGGCCUCcgugcccaagaugUGUCUCCg -3' miRNA: 3'- auCCCGgGCUu-ACCUGGGG-------------ACAGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 157633 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 154555 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 151477 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 148399 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 145321 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 142243 | 0.66 | 0.823458 |
Target: 5'- aGGGGCuCUGGGgcgccGGuCCCCUGgUUCCc -3' miRNA: 3'- aUCCCG-GGCUUa----CCuGGGGACaGAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 88827 | 0.66 | 0.815064 |
Target: 5'- -uGGGCCUGA--GGcUCCCUGUaUCCc -3' miRNA: 3'- auCCCGGGCUuaCCuGGGGACAgAGG- -5' |
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29152 | 5' | -58.9 | NC_006146.1 | + | 116293 | 0.66 | 0.815064 |
Target: 5'- gAGGcGgCCGGAUGGcGCCCCcgcgGUCcucUCCc -3' miRNA: 3'- aUCC-CgGGCUUACC-UGGGGa---CAG---AGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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