miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 482 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 1413 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 1969 0.7 0.594997
Target:  5'- --cGGCCUGuccacGGGCCCCcucGUCUCCa -3'
miRNA:   3'- aucCCGGGCuua--CCUGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 2058 0.69 0.624901
Target:  5'- gAGGGCCCGAGaguUGG-CCCUcGUCg-- -3'
miRNA:   3'- aUCCCGGGCUU---ACCuGGGGaCAGagg -5'
29152 5' -58.9 NC_006146.1 + 2345 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 3277 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 6430 0.68 0.684643
Target:  5'- cAGGGCCau-GUGGGCCCUgGggUCCa -3'
miRNA:   3'- aUCCCGGgcuUACCUGGGGaCagAGG- -5'
29152 5' -58.9 NC_006146.1 + 7929 0.66 0.806512
Target:  5'- gGGGGaCCCGGGaaagGGGCgCCCgccaaCUCCg -3'
miRNA:   3'- aUCCC-GGGCUUa---CCUG-GGGaca--GAGG- -5'
29152 5' -58.9 NC_006146.1 + 11898 0.7 0.604948
Target:  5'- cGGGGCCCGGcaacuacgcgGUGGAgCaCCUGgUCUUUg -3'
miRNA:   3'- aUCCCGGGCU----------UACCUgG-GGAC-AGAGG- -5'
29152 5' -58.9 NC_006146.1 + 13379 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5'
29152 5' -58.9 NC_006146.1 + 15046 0.67 0.779983
Target:  5'- cAGGGCCCGcc-GGGCCUgcgaggaggcaCUGgcgggggCUCCg -3'
miRNA:   3'- aUCCCGGGCuuaCCUGGG-----------GACa------GAGG- -5'
29152 5' -58.9 NC_006146.1 + 16457 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5'
29152 5' -58.9 NC_006146.1 + 19535 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5'
29152 5' -58.9 NC_006146.1 + 22613 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5'
29152 5' -58.9 NC_006146.1 + 25691 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5'
29152 5' -58.9 NC_006146.1 + 28769 0.68 0.694503
Target:  5'- cGGGGCCCa---GGGCCCCUaGUC-Ca -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGA-CAGaGg -5'
29152 5' -58.9 NC_006146.1 + 31842 0.67 0.779983
Target:  5'- cAGGGCCCGuAUGGugGCCgCCaGUUacccguUCCa -3'
miRNA:   3'- aUCCCGGGCuUACC--UGG-GGaCAG------AGG- -5'
29152 5' -58.9 NC_006146.1 + 33249 0.66 0.797809
Target:  5'- -cGGGUCCGcc-GGGCCgCUGccccgCUCCg -3'
miRNA:   3'- auCCCGGGCuuaCCUGGgGACa----GAGG- -5'
29152 5' -58.9 NC_006146.1 + 33371 0.66 0.823458
Target:  5'- -uGGGUCCGcc-GGGCCgCUGccccgCUCCg -3'
miRNA:   3'- auCCCGGGCuuaCCUGGgGACa----GAGG- -5'
29152 5' -58.9 NC_006146.1 + 38433 0.66 0.823458
Target:  5'- -cGGGCCUcugcUGGcacacauCCCCUGcCUCCg -3'
miRNA:   3'- auCCCGGGcuu-ACCu------GGGGACaGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.