miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 170529 0.66 0.788963
Target:  5'- cGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- aUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 170437 0.66 0.787178
Target:  5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 169776 0.69 0.65485
Target:  5'- gGGGGCaCCGGcgcGUGGAgaagaCCCU-UCUCCg -3'
miRNA:   3'- aUCCCG-GGCU---UACCUg----GGGAcAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 169675 0.66 0.797809
Target:  5'- -cGGGCgCGcGUGGcccGCCCCcggGUCUUCc -3'
miRNA:   3'- auCCCGgGCuUACC---UGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 169597 0.67 0.770877
Target:  5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 169506 0.66 0.787178
Target:  5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 168844 0.69 0.65485
Target:  5'- gGGGGCaCCGGcgcGUGGAgaagaCCCU-UCUCCg -3'
miRNA:   3'- aUCCCG-GGCU---UACCUg----GGGAcAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 168743 0.66 0.797809
Target:  5'- -cGGGCgCGcGUGGcccGCCCCcggGUCUUCc -3'
miRNA:   3'- auCCCGgGCuUACC---UGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 168664 0.67 0.770877
Target:  5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 168574 0.66 0.787178
Target:  5'- cGGGGCCCGGcgcgugccgggGGACCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua---------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 167912 0.69 0.65485
Target:  5'- gGGGGCaCCGGcgcGUGGAgaagaCCCU-UCUCCg -3'
miRNA:   3'- aUCCCG-GGCU---UACCUg----GGGAcAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 167811 0.66 0.797809
Target:  5'- -cGGGCgCGcGUGGcccGCCCCcggGUCUUCc -3'
miRNA:   3'- auCCCGgGCuUACC---UGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 167732 0.67 0.770877
Target:  5'- gUGGGGCCUGAggGGGCgCggcgaUUGUCgCCg -3'
miRNA:   3'- -AUCCCGGGCUuaCCUGgG-----GACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 167642 0.66 0.806512
Target:  5'- cGGGGCCCGGcgcgugccggGGGCCCgggggcgUGUC-CCg -3'
miRNA:   3'- aUCCCGGGCUua--------CCUGGGg------ACAGaGG- -5'
29152 5' -58.9 NC_006146.1 + 164670 1.09 0.001616
Target:  5'- aAGGGCCCGAAUGGACCCCUGUCUCCa -3'
miRNA:   3'- aUCCCGGGCUUACCUGGGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 164461 0.7 0.565325
Target:  5'- uUGGGGCCCc-AUGGACCCCaGgg-CCc -3'
miRNA:   3'- -AUCCCGGGcuUACCUGGGGaCagaGG- -5'
29152 5' -58.9 NC_006146.1 + 164251 0.69 0.614918
Target:  5'- gUGGGGCCUG-GUGGGCCaCCUccCUCg -3'
miRNA:   3'- -AUCCCGGGCuUACCUGG-GGAcaGAGg -5'
29152 5' -58.9 NC_006146.1 + 158724 0.66 0.809951
Target:  5'- gUAGGaGCCCGA--GGcCCCCgagaucacguagggGUCUCUc -3'
miRNA:   3'- -AUCC-CGGGCUuaCCuGGGGa-------------CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 158546 0.69 0.644874
Target:  5'- cGGGGUCCcug-GGGCUCCU-UCUCCa -3'
miRNA:   3'- aUCCCGGGcuuaCCUGGGGAcAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 158449 0.71 0.544783
Target:  5'- gAGGGCCUGAAaGG-CCCCggcgccuggcucaUGUgUCCa -3'
miRNA:   3'- aUCCCGGGCUUaCCuGGGG-------------ACAgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.