miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29152 5' -58.9 NC_006146.1 + 164670 1.09 0.001616
Target:  5'- aAGGGCCCGAAUGGACCCCUGUCUCCa -3'
miRNA:   3'- aUCCCGGGCUUACCUGGGGACAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 121685 0.75 0.308547
Target:  5'- gAGGGCaUCGAccguauccUGGACCCCaugGUCUCCg -3'
miRNA:   3'- aUCCCG-GGCUu-------ACCUGGGGa--CAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 149890 0.75 0.329862
Target:  5'- gAGGGCuaGAGUGagguagaaGACCCCUGUCUUa -3'
miRNA:   3'- aUCCCGggCUUAC--------CUGGGGACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 146812 0.75 0.329862
Target:  5'- gAGGGCuaGAGUGagguagaaGACCCCUGUCUUa -3'
miRNA:   3'- aUCCCGggCUUAC--------CUGGGGACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 152968 0.75 0.329862
Target:  5'- gAGGGCuaGAGUGagguagaaGACCCCUGUCUUa -3'
miRNA:   3'- aUCCCGggCUUAC--------CUGGGGACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 156046 0.75 0.329862
Target:  5'- gAGGGCuaGAGUGagguagaaGACCCCUGUCUUa -3'
miRNA:   3'- aUCCCGggCUUAC--------CUGGGGACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 143734 0.75 0.329862
Target:  5'- gAGGGCuaGAGUGagguagaaGACCCCUGUCUUa -3'
miRNA:   3'- aUCCCGggCUUAC--------CUGGGGACAGAGg -5'
29152 5' -58.9 NC_006146.1 + 151376 0.74 0.375679
Target:  5'- aGGGGCCC---UGGGCCCCgagGgcggCUCCc -3'
miRNA:   3'- aUCCCGGGcuuACCUGGGGa--Ca---GAGG- -5'
29152 5' -58.9 NC_006146.1 + 142142 0.74 0.375679
Target:  5'- aGGGGCCC---UGGGCCCCgagGgcggCUCCc -3'
miRNA:   3'- aUCCCGGGcuuACCUGGGGa--Ca---GAGG- -5'
29152 5' -58.9 NC_006146.1 + 154454 0.74 0.375679
Target:  5'- aGGGGCCC---UGGGCCCCgagGgcggCUCCc -3'
miRNA:   3'- aUCCCGGGcuuACCUGGGGa--Ca---GAGG- -5'
29152 5' -58.9 NC_006146.1 + 157532 0.74 0.375679
Target:  5'- aGGGGCCC---UGGGCCCCgagGgcggCUCCc -3'
miRNA:   3'- aUCCCGGGcuuACCUGGGGa--Ca---GAGG- -5'
29152 5' -58.9 NC_006146.1 + 148298 0.74 0.375679
Target:  5'- aGGGGCCC---UGGGCCCCgagGgcggCUCCc -3'
miRNA:   3'- aUCCCGGGcuuACCUGGGGa--Ca---GAGG- -5'
29152 5' -58.9 NC_006146.1 + 145220 0.74 0.375679
Target:  5'- aGGGGCCC---UGGGCCCCgagGgcggCUCCc -3'
miRNA:   3'- aUCCCGGGcuuACCUGGGGa--Ca---GAGG- -5'
29152 5' -58.9 NC_006146.1 + 125059 0.74 0.383721
Target:  5'- aGGGGCUCGGG-GGACgccauCCCcGUCUCCg -3'
miRNA:   3'- aUCCCGGGCUUaCCUG-----GGGaCAGAGG- -5'
29152 5' -58.9 NC_006146.1 + 85254 0.74 0.383721
Target:  5'- cAGGGUCCccGUGGgccaaccaGCCCCUGUCUgCCu -3'
miRNA:   3'- aUCCCGGGcuUACC--------UGGGGACAGA-GG- -5'
29152 5' -58.9 NC_006146.1 + 3277 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 1413 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 482 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 2345 0.74 0.391877
Target:  5'- -cGGGCCCcGcgGGACCCCcccCUCCg -3'
miRNA:   3'- auCCCGGGcUuaCCUGGGGacaGAGG- -5'
29152 5' -58.9 NC_006146.1 + 57643 0.73 0.400145
Target:  5'- aAGGGCCacaaGuuUGGcguGCCCCUGUCUUa -3'
miRNA:   3'- aUCCCGGg---CuuACC---UGGGGACAGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.