miRNA display CGI


Results 41 - 60 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 162630 0.85 0.330785
Target:  5'- uGGGGcucCCAGAGAGaacGGGGGUGCAUGCc -3'
miRNA:   3'- -CCCUa--GGUUUCUCa--UCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 105195 0.77 0.730272
Target:  5'- cGGGG-CCGGGGAGccGGGGGUGCccgGUGCc -3'
miRNA:   3'- -CCCUaGGUUUCUCa-UCCCUACG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 132443 0.69 0.979944
Target:  5'- cGGAUggcacccgucaccCCGGAGGcaGGGGAUGUGUGCc -3'
miRNA:   3'- cCCUA-------------GGUUUCUcaUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 138099 0.69 0.984288
Target:  5'- aGGGAagcagCCAAGGAGgugcugcGGGGAUagGCAgccgGCu -3'
miRNA:   3'- -CCCUa----GGUUUCUCa------UCCCUA--CGUa---CG- -5'
29153 3' -49.7 NC_006146.1 + 122194 0.69 0.984288
Target:  5'- cGGGAggCCAGAGAGcGGacGGAgcgGCggGCg -3'
miRNA:   3'- -CCCUa-GGUUUCUCaUC--CCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 52075 0.69 0.985914
Target:  5'- aGGAUgCCAGGGAGgcGGGcaucaaguucgagGUGC-UGCu -3'
miRNA:   3'- cCCUA-GGUUUCUCauCCC-------------UACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 150684 0.69 0.986086
Target:  5'- gGGGAguggCCAGGGGGacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa---UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 84718 0.68 0.989205
Target:  5'- aGGGAcUgGAGGAGgagcucauUAGGGAUG-AUGCa -3'
miRNA:   3'- -CCCUaGgUUUCUC--------AUCCCUACgUACG- -5'
29153 3' -49.7 NC_006146.1 + 71456 0.68 0.990545
Target:  5'- uGGcgCCGAGGAGcgAGGGccuCAUGCu -3'
miRNA:   3'- cCCuaGGUUUCUCa-UCCCuacGUACG- -5'
29153 3' -49.7 NC_006146.1 + 81655 0.68 0.99175
Target:  5'- uGGGGcUCGGAGGGUgccGGGGAaGCG-GCg -3'
miRNA:   3'- -CCCUaGGUUUCUCA---UCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 144666 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 147743 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 40262 0.77 0.740418
Target:  5'- uGGGAUCCGu--AGUAGGGAggcGCggGCg -3'
miRNA:   3'- -CCCUAGGUuucUCAUCCCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 41080 0.74 0.859448
Target:  5'- aGGGAggCCAGGGAcagcGaGGGGAgccagGCGUGCa -3'
miRNA:   3'- -CCCUa-GGUUUCU----CaUCCCUa----CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 41116 0.72 0.921425
Target:  5'- aGGGccUCCAcuuuAGGGUcccgGGGGAgggGCGUGCg -3'
miRNA:   3'- -CCCu-AGGUu---UCUCA----UCCCUa--CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 141450 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 144528 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 147606 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 153761 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 150821 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.