miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 169295 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 81396 0.67 0.99718
Target:  5'- uGGGccaaagCCAAAGAGcuuuuGGGAaaUGCggGCa -3'
miRNA:   3'- -CCCua----GGUUUCUCau---CCCU--ACGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 51554 0.68 0.993795
Target:  5'- gGGGAUUacuggaGAuGGGUGGGGAgGCG-GCg -3'
miRNA:   3'- -CCCUAGg-----UUuCUCAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 168363 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 167431 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 165994 1.16 0.004586
Target:  5'- aGGGAUCCAAAGAGUAGGGAUGCAUGCg -3'
miRNA:   3'- -CCCUAGGUUUCUCAUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 8257 0.67 0.99608
Target:  5'- uGGAgagUAGGGAGggggAGGGA-GCGUGCc -3'
miRNA:   3'- cCCUag-GUUUCUCa---UCCCUaCGUACG- -5'
29153 3' -49.7 NC_006146.1 + 59537 0.66 0.997625
Target:  5'- ---cUCCA---GGUGGGGGUGCAgcgugGCg -3'
miRNA:   3'- cccuAGGUuucUCAUCCCUACGUa----CG- -5'
29153 3' -49.7 NC_006146.1 + 132443 0.69 0.979944
Target:  5'- cGGAUggcacccgucaccCCGGAGGcaGGGGAUGUGUGCc -3'
miRNA:   3'- cCCUA-------------GGUUUCUcaUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 138099 0.69 0.984288
Target:  5'- aGGGAagcagCCAAGGAGgugcugcGGGGAUagGCAgccgGCu -3'
miRNA:   3'- -CCCUa----GGUUUCUCa------UCCCUA--CGUa---CG- -5'
29153 3' -49.7 NC_006146.1 + 33209 0.67 0.994653
Target:  5'- gGGGAggCCGGAGGGggagccGGGAUGgG-GCu -3'
miRNA:   3'- -CCCUa-GGUUUCUCau----CCCUACgUaCG- -5'
29153 3' -49.7 NC_006146.1 + 78574 0.67 0.994653
Target:  5'- cGGGugcuguUCUGAgccAGGGgagAGGGGUGC-UGCg -3'
miRNA:   3'- -CCCu-----AGGUU---UCUCa--UCCCUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 142973 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 146051 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 139609 0.67 0.996612
Target:  5'- aGGAgaaggccUCCAuGGAGccgaugGGGGAgGCAUGUg -3'
miRNA:   3'- cCCU-------AGGUuUCUCa-----UCCCUaCGUACG- -5'
29153 3' -49.7 NC_006146.1 + 71456 0.68 0.990545
Target:  5'- uGGcgCCGAGGAGcgAGGGccuCAUGCu -3'
miRNA:   3'- cCCuaGGUUUCUCa-UCCCuacGUACG- -5'
29153 3' -49.7 NC_006146.1 + 84718 0.68 0.989205
Target:  5'- aGGGAcUgGAGGAGgagcucauUAGGGAUG-AUGCa -3'
miRNA:   3'- -CCCUaGgUUUCUC--------AUCCCUACgUACG- -5'
29153 3' -49.7 NC_006146.1 + 150684 0.69 0.986086
Target:  5'- gGGGAguggCCAGGGGGacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa---UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 52075 0.69 0.985914
Target:  5'- aGGAUgCCAGGGAGgcGGGcaucaaguucgagGUGC-UGCu -3'
miRNA:   3'- cCCUA-GGUUUCUCauCCC-------------UACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 122194 0.69 0.984288
Target:  5'- cGGGAggCCAGAGAGcGGacGGAgcgGCggGCg -3'
miRNA:   3'- -CCCUa-GGUUUCUCaUC--CCUa--CGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.