miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 66719 0.71 0.955521
Target:  5'- gGGGAgcacgucuUCCAuguucucGGAGUcAGGGGguggGCAUGCc -3'
miRNA:   3'- -CCCU--------AGGUu------UCUCA-UCCCUa---CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 67362 0.72 0.937062
Target:  5'- cGGGGUCCGGgucccacgaguacGGGG-AGGGggGCucgGUGCg -3'
miRNA:   3'- -CCCUAGGUU-------------UCUCaUCCCuaCG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 71456 0.68 0.990545
Target:  5'- uGGcgCCGAGGAGcgAGGGccuCAUGCu -3'
miRNA:   3'- cCCuaGGUUUCUCa-UCCCuacGUACG- -5'
29153 3' -49.7 NC_006146.1 + 78574 0.67 0.994653
Target:  5'- cGGGugcuguUCUGAgccAGGGgagAGGGGUGC-UGCg -3'
miRNA:   3'- -CCCu-----AGGUU---UCUCa--UCCCUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 81396 0.67 0.99718
Target:  5'- uGGGccaaagCCAAAGAGcuuuuGGGAaaUGCggGCa -3'
miRNA:   3'- -CCCua----GGUUUCUCau---CCCU--ACGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 81655 0.68 0.99175
Target:  5'- uGGGGcUCGGAGGGUgccGGGGAaGCG-GCg -3'
miRNA:   3'- -CCCUaGGUUUCUCA---UCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 84718 0.68 0.989205
Target:  5'- aGGGAcUgGAGGAGgagcucauUAGGGAUG-AUGCa -3'
miRNA:   3'- -CCCUaGgUUUCUC--------AUCCCUACgUACG- -5'
29153 3' -49.7 NC_006146.1 + 94695 0.66 0.99801
Target:  5'- gGGGGUUCuuGGGGUGGGccUGcCAUGg -3'
miRNA:   3'- -CCCUAGGuuUCUCAUCCcuAC-GUACg -5'
29153 3' -49.7 NC_006146.1 + 99571 0.69 0.983716
Target:  5'- cGGGGUCC-AGGAGguagaagacgggcuUGGGGccGCgGUGCu -3'
miRNA:   3'- -CCCUAGGuUUCUC--------------AUCCCuaCG-UACG- -5'
29153 3' -49.7 NC_006146.1 + 105195 0.77 0.730272
Target:  5'- cGGGG-CCGGGGAGccGGGGGUGCccgGUGCc -3'
miRNA:   3'- -CCCUaGGUUUCUCa-UCCCUACG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 115237 0.66 0.998624
Target:  5'- aGGGAgcCCAgcuGAGAGgcccAGGGAUucacCGUGCu -3'
miRNA:   3'- -CCCUa-GGU---UUCUCa---UCCCUAc---GUACG- -5'
29153 3' -49.7 NC_006146.1 + 122194 0.69 0.984288
Target:  5'- cGGGAggCCAGAGAGcGGacGGAgcgGCggGCg -3'
miRNA:   3'- -CCCUa-GGUUUCUCaUC--CCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 132443 0.69 0.979944
Target:  5'- cGGAUggcacccgucaccCCGGAGGcaGGGGAUGUGUGCc -3'
miRNA:   3'- cCCUA-------------GGUUUCUcaUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 135971 0.67 0.99718
Target:  5'- cGGGGUgCu-GGGGUGGGGGauggGCucagGCa -3'
miRNA:   3'- -CCCUAgGuuUCUCAUCCCUa---CGua--CG- -5'
29153 3' -49.7 NC_006146.1 + 137986 0.67 0.996667
Target:  5'- gGGGGcCCGGcGGGGUGGGGG---GUGCg -3'
miRNA:   3'- -CCCUaGGUU-UCUCAUCCCUacgUACG- -5'
29153 3' -49.7 NC_006146.1 + 138099 0.69 0.984288
Target:  5'- aGGGAagcagCCAAGGAGgugcugcGGGGAUagGCAgccgGCu -3'
miRNA:   3'- -CCCUa----GGUUUCUCa------UCCCUA--CGUa---CG- -5'
29153 3' -49.7 NC_006146.1 + 139609 0.67 0.996612
Target:  5'- aGGAgaaggccUCCAuGGAGccgaugGGGGAgGCAUGUg -3'
miRNA:   3'- cCCU-------AGGUuUCUCa-----UCCCUaCGUACG- -5'
29153 3' -49.7 NC_006146.1 + 141450 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 141588 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 142973 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.