miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 19 0.67 0.99718
Target:  5'- gGGGggUUGAGGGGccGGGAUGgAUGUu -3'
miRNA:   3'- -CCCuaGGUUUCUCauCCCUACgUACG- -5'
29153 3' -49.7 NC_006146.1 + 5204 0.67 0.99608
Target:  5'- uGGGccUgGGGGAGcUAGGGGUGCAgguccuUGCc -3'
miRNA:   3'- -CCCuaGgUUUCUC-AUCCCUACGU------ACG- -5'
29153 3' -49.7 NC_006146.1 + 8257 0.67 0.99608
Target:  5'- uGGAgagUAGGGAGggggAGGGA-GCGUGCc -3'
miRNA:   3'- cCCUag-GUUUCUCa---UCCCUaCGUACG- -5'
29153 3' -49.7 NC_006146.1 + 12721 0.7 0.966428
Target:  5'- gGGGGUCCugacggccAAGGAGgccaAGGuGGUGCAcGCu -3'
miRNA:   3'- -CCCUAGG--------UUUCUCa---UCC-CUACGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 22273 0.68 0.993795
Target:  5'- uGGAagUCCAcAGAc-AGGGAgggugGCAUGCa -3'
miRNA:   3'- cCCU--AGGUuUCUcaUCCCUa----CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 31685 0.7 0.969602
Target:  5'- aGGGA-CCAgggAAGGGUGGGGGaccGCGgcUGCc -3'
miRNA:   3'- -CCCUaGGU---UUCUCAUCCCUa--CGU--ACG- -5'
29153 3' -49.7 NC_006146.1 + 32141 0.67 0.99718
Target:  5'- cGGGGUgCu-GGGGUGGGGGauggGCucagGCa -3'
miRNA:   3'- -CCCUAgGuuUCUCAUCCCUa---CGua--CG- -5'
29153 3' -49.7 NC_006146.1 + 33209 0.67 0.994653
Target:  5'- gGGGAggCCGGAGGGggagccGGGAUGgG-GCu -3'
miRNA:   3'- -CCCUa-GGUUUCUCau----CCCUACgUaCG- -5'
29153 3' -49.7 NC_006146.1 + 33240 0.66 0.998571
Target:  5'- uGGGGUUCcGGGGGUGGGGGcuccacgaacccGCuUGCc -3'
miRNA:   3'- -CCCUAGGuUUCUCAUCCCUa-----------CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 37773 0.67 0.996667
Target:  5'- aGGGAggugCCuuGGAGcAGaaGAUGCAUGUu -3'
miRNA:   3'- -CCCUa---GGuuUCUCaUCc-CUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 40262 0.77 0.740418
Target:  5'- uGGGAUCCGu--AGUAGGGAggcGCggGCg -3'
miRNA:   3'- -CCCUAGGUuucUCAUCCCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 41080 0.74 0.859448
Target:  5'- aGGGAggCCAGGGAcagcGaGGGGAgccagGCGUGCa -3'
miRNA:   3'- -CCCUa-GGUUUCU----CaUCCCUa----CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 41116 0.72 0.921425
Target:  5'- aGGGccUCCAcuuuAGGGUcccgGGGGAgggGCGUGCg -3'
miRNA:   3'- -CCCu-AGGUu---UCUCA----UCCCUa--CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 42542 0.67 0.995412
Target:  5'- uGGGAagcagaCGGGGGGUGGGGggGCGcUGa -3'
miRNA:   3'- -CCCUag----GUUUCUCAUCCCuaCGU-ACg -5'
29153 3' -49.7 NC_006146.1 + 47702 0.69 0.986086
Target:  5'- uGGGcgUgGAAGAgGUGGGGA-GCA-GCg -3'
miRNA:   3'- -CCCuaGgUUUCU-CAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 51554 0.68 0.993795
Target:  5'- gGGGAUUacuggaGAuGGGUGGGGAgGCG-GCg -3'
miRNA:   3'- -CCCUAGg-----UUuCUCAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 52075 0.69 0.985914
Target:  5'- aGGAUgCCAGGGAGgcGGGcaucaaguucgagGUGC-UGCu -3'
miRNA:   3'- cCCUA-GGUUUCUCauCCC-------------UACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 53438 0.68 0.99175
Target:  5'- aGGAUCCGAAaGGgcGGuGGUGUcUGCc -3'
miRNA:   3'- cCCUAGGUUUcUCauCC-CUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 59537 0.66 0.997625
Target:  5'- ---cUCCA---GGUGGGGGUGCAgcgugGCg -3'
miRNA:   3'- cccuAGGUuucUCAUCCCUACGUa----CG- -5'
29153 3' -49.7 NC_006146.1 + 60127 0.71 0.951406
Target:  5'- aGGGGcCgGGGGAGggaccuggugGGGGGUGUGUGCc -3'
miRNA:   3'- -CCCUaGgUUUCUCa---------UCCCUACGUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.