miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 165994 1.16 0.004586
Target:  5'- aGGGAUCCAAAGAGUAGGGAUGCAUGCg -3'
miRNA:   3'- -CCCUAGGUUUCUCAUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 162630 0.85 0.330785
Target:  5'- uGGGGcucCCAGAGAGaacGGGGGUGCAUGCc -3'
miRNA:   3'- -CCCUa--GGUUUCUCa--UCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 105195 0.77 0.730272
Target:  5'- cGGGG-CCGGGGAGccGGGGGUGCccgGUGCc -3'
miRNA:   3'- -CCCUaGGUUUCUCa-UCCCUACG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 40262 0.77 0.740418
Target:  5'- uGGGAUCCGu--AGUAGGGAggcGCggGCg -3'
miRNA:   3'- -CCCUAGGUuucUCAUCCCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 168363 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 169295 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 170226 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 167431 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 41080 0.74 0.859448
Target:  5'- aGGGAggCCAGGGAcagcGaGGGGAgccagGCGUGCa -3'
miRNA:   3'- -CCCUa-GGUUUCU----CaUCCCUa----CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 41116 0.72 0.921425
Target:  5'- aGGGccUCCAcuuuAGGGUcccgGGGGAgggGCGUGCg -3'
miRNA:   3'- -CCCu-AGGUu---UCUCA----UCCCUa--CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 67362 0.72 0.937062
Target:  5'- cGGGGUCCGGgucccacgaguacGGGG-AGGGggGCucgGUGCg -3'
miRNA:   3'- -CCCUAGGUU-------------UCUCaUCCCuaCG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 141450 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 156839 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 153761 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 147606 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 144528 0.72 0.937563
Target:  5'- gGGGAguggCCAGGGAGgacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa----UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 60127 0.71 0.951406
Target:  5'- aGGGGcCgGGGGAGggaccuggugGGGGGUGUGUGCc -3'
miRNA:   3'- -CCCUaGgUUUCUCa---------UCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 66719 0.71 0.955521
Target:  5'- gGGGAgcacgucuUCCAuguucucGGAGUcAGGGGguggGCAUGCc -3'
miRNA:   3'- -CCCU--------AGGUu------UCUCA-UCCCUa---CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 12721 0.7 0.966428
Target:  5'- gGGGGUCCugacggccAAGGAGgccaAGGuGGUGCAcGCu -3'
miRNA:   3'- -CCCUAGG--------UUUCUCa---UCC-CUACGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 31685 0.7 0.969602
Target:  5'- aGGGA-CCAgggAAGGGUGGGGGaccGCGgcUGCc -3'
miRNA:   3'- -CCCUaGGU---UUCUCAUCCCUa--CGU--ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.