miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 167264 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 168196 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 169128 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 170060 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 132443 0.69 0.979944
Target:  5'- cGGAUggcacccgucaccCCGGAGGcaGGGGAUGUGUGCc -3'
miRNA:   3'- cCCUA-------------GGUUUCUcaUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 99571 0.69 0.983716
Target:  5'- cGGGGUCC-AGGAGguagaagacgggcuUGGGGccGCgGUGCu -3'
miRNA:   3'- -CCCUAGGuUUCUC--------------AUCCCuaCG-UACG- -5'
29153 3' -49.7 NC_006146.1 + 122194 0.69 0.984288
Target:  5'- cGGGAggCCAGAGAGcGGacGGAgcgGCggGCg -3'
miRNA:   3'- -CCCUa-GGUUUCUCaUC--CCUa--CGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 138099 0.69 0.984288
Target:  5'- aGGGAagcagCCAAGGAGgugcugcGGGGAUagGCAgccgGCu -3'
miRNA:   3'- -CCCUa----GGUUUCUCa------UCCCUA--CGUa---CG- -5'
29153 3' -49.7 NC_006146.1 + 52075 0.69 0.985914
Target:  5'- aGGAUgCCAGGGAGgcGGGcaucaaguucgagGUGC-UGCu -3'
miRNA:   3'- cCCUA-GGUUUCUCauCCC-------------UACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 150684 0.69 0.986086
Target:  5'- gGGGAguggCCAGGGGGacggAGGGccugGCcUGCg -3'
miRNA:   3'- -CCCUa---GGUUUCUCa---UCCCua--CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 47702 0.69 0.986086
Target:  5'- uGGGcgUgGAAGAgGUGGGGA-GCA-GCg -3'
miRNA:   3'- -CCCuaGgUUUCU-CAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 84718 0.68 0.989205
Target:  5'- aGGGAcUgGAGGAGgagcucauUAGGGAUG-AUGCa -3'
miRNA:   3'- -CCCUaGgUUUCUC--------AUCCCUACgUACG- -5'
29153 3' -49.7 NC_006146.1 + 161708 0.68 0.989205
Target:  5'- gGGGAgcUCCuGGGAGaaggcuUGGGGGUGgGUGg -3'
miRNA:   3'- -CCCU--AGGuUUCUC------AUCCCUACgUACg -5'
29153 3' -49.7 NC_006146.1 + 149954 0.68 0.989205
Target:  5'- gGGGcgCCcaggcguuGGGAGUGGGGGccaggGCcUGCa -3'
miRNA:   3'- -CCCuaGGu-------UUCUCAUCCCUa----CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 71456 0.68 0.990545
Target:  5'- uGGcgCCGAGGAGcgAGGGccuCAUGCu -3'
miRNA:   3'- cCCuaGGUUUCUCa-UCCCuacGUACG- -5'
29153 3' -49.7 NC_006146.1 + 53438 0.68 0.99175
Target:  5'- aGGAUCCGAAaGGgcGGuGGUGUcUGCc -3'
miRNA:   3'- cCCUAGGUUUcUCauCC-CUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 81655 0.68 0.99175
Target:  5'- uGGGGcUCGGAGGGUgccGGGGAaGCG-GCg -3'
miRNA:   3'- -CCCUaGGUUUCUCA---UCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 141588 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 144666 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 147743 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.