miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 161708 0.68 0.989205
Target:  5'- gGGGAgcUCCuGGGAGaaggcuUGGGGGUGgGUGg -3'
miRNA:   3'- -CCCU--AGGuUUCUC------AUCCCUACgUACg -5'
29153 3' -49.7 NC_006146.1 + 165994 1.16 0.004586
Target:  5'- aGGGAUCCAAAGAGUAGGGAUGCAUGCg -3'
miRNA:   3'- -CCCUAGGUUUCUCAUCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 167431 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 168196 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 169128 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 168363 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 60127 0.71 0.951406
Target:  5'- aGGGGcCgGGGGAGggaccuggugGGGGGUGUGUGCc -3'
miRNA:   3'- -CCCUaGgUUUCUCa---------UCCCUACGUACG- -5'
29153 3' -49.7 NC_006146.1 + 167264 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5'
29153 3' -49.7 NC_006146.1 + 149954 0.68 0.989205
Target:  5'- gGGGcgCCcaggcguuGGGAGUGGGGGccaggGCcUGCa -3'
miRNA:   3'- -CCCuaGGu-------UUCUCAUCCCUa----CGuACG- -5'
29153 3' -49.7 NC_006146.1 + 42542 0.67 0.995412
Target:  5'- uGGGAagcagaCGGGGGGUGGGGggGCGcUGa -3'
miRNA:   3'- -CCCUag----GUUUCUCAUCCCuaCGU-ACg -5'
29153 3' -49.7 NC_006146.1 + 115237 0.66 0.998624
Target:  5'- aGGGAgcCCAgcuGAGAGgcccAGGGAUucacCGUGCu -3'
miRNA:   3'- -CCCUa-GGU---UUCUCa---UCCCUAc---GUACG- -5'
29153 3' -49.7 NC_006146.1 + 170226 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 169295 0.76 0.798804
Target:  5'- cGGGGUCCcggggcGGGGGGUcGGGcggGCAUGCu -3'
miRNA:   3'- -CCCUAGG------UUUCUCAuCCCua-CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 99571 0.69 0.983716
Target:  5'- cGGGGUCC-AGGAGguagaagacgggcuUGGGGccGCgGUGCu -3'
miRNA:   3'- -CCCUAGGuUUCUC--------------AUCCCuaCG-UACG- -5'
29153 3' -49.7 NC_006146.1 + 47702 0.69 0.986086
Target:  5'- uGGGcgUgGAAGAgGUGGGGA-GCA-GCg -3'
miRNA:   3'- -CCCuaGgUUUCU-CAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 67362 0.72 0.937062
Target:  5'- cGGGGUCCGGgucccacgaguacGGGG-AGGGggGCucgGUGCg -3'
miRNA:   3'- -CCCUAGGUU-------------UCUCaUCCCuaCG---UACG- -5'
29153 3' -49.7 NC_006146.1 + 51554 0.68 0.993795
Target:  5'- gGGGAUUacuggaGAuGGGUGGGGAgGCG-GCg -3'
miRNA:   3'- -CCCUAGg-----UUuCUCAUCCCUaCGUaCG- -5'
29153 3' -49.7 NC_006146.1 + 5204 0.67 0.99608
Target:  5'- uGGGccUgGGGGAGcUAGGGGUGCAgguccuUGCc -3'
miRNA:   3'- -CCCuaGgUUUCUC-AUCCCUACGU------ACG- -5'
29153 3' -49.7 NC_006146.1 + 66719 0.71 0.955521
Target:  5'- gGGGAgcacgucuUCCAuguucucGGAGUcAGGGGguggGCAUGCc -3'
miRNA:   3'- -CCCU--------AGGUu------UCUCA-UCCCUa---CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 170060 0.7 0.975296
Target:  5'- gGGGAgggcCCGGGGccgcgcGUGGGGAUGgCcgGCg -3'
miRNA:   3'- -CCCUa---GGUUUCu-----CAUCCCUAC-GuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.