miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 3' -49.7 NC_006146.1 + 144666 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 142973 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 78574 0.67 0.994653
Target:  5'- cGGGugcuguUCUGAgccAGGGgagAGGGGUGC-UGCg -3'
miRNA:   3'- -CCCu-----AGGUU---UCUCa--UCCCUACGuACG- -5'
29153 3' -49.7 NC_006146.1 + 33209 0.67 0.994653
Target:  5'- gGGGAggCCGGAGGGggagccGGGAUGgG-GCu -3'
miRNA:   3'- -CCCUa-GGUUUCUCau----CCCUACgUaCG- -5'
29153 3' -49.7 NC_006146.1 + 22273 0.68 0.993795
Target:  5'- uGGAagUCCAcAGAc-AGGGAgggugGCAUGCa -3'
miRNA:   3'- cCCU--AGGUuUCUcaUCCCUa----CGUACG- -5'
29153 3' -49.7 NC_006146.1 + 156977 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 153899 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 150821 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 147743 0.68 0.993795
Target:  5'- gGGGAgggAGAGAGgagGGGGAgGCggGCg -3'
miRNA:   3'- -CCCUaggUUUCUCa--UCCCUaCGuaCG- -5'
29153 3' -49.7 NC_006146.1 + 146051 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 149129 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 152207 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 94695 0.66 0.99801
Target:  5'- gGGGGUUCuuGGGGUGGGccUGcCAUGg -3'
miRNA:   3'- -CCCUAGGuuUCUCAUCCcuAC-GUACg -5'
29153 3' -49.7 NC_006146.1 + 59537 0.66 0.997625
Target:  5'- ---cUCCA---GGUGGGGGUGCAgcgugGCg -3'
miRNA:   3'- cccuAGGUuucUCAUCCCUACGUa----CG- -5'
29153 3' -49.7 NC_006146.1 + 135971 0.67 0.99718
Target:  5'- cGGGGUgCu-GGGGUGGGGGauggGCucagGCa -3'
miRNA:   3'- -CCCUAgGuuUCUCAUCCCUa---CGua--CG- -5'
29153 3' -49.7 NC_006146.1 + 32141 0.67 0.99718
Target:  5'- cGGGGUgCu-GGGGUGGGGGauggGCucagGCa -3'
miRNA:   3'- -CCCUAgGuuUCUCAUCCCUa---CGua--CG- -5'
29153 3' -49.7 NC_006146.1 + 139609 0.67 0.996612
Target:  5'- aGGAgaaggccUCCAuGGAGccgaugGGGGAgGCAUGUg -3'
miRNA:   3'- cCCU-------AGGUuUCUCa-----UCCCUaCGUACG- -5'
29153 3' -49.7 NC_006146.1 + 8257 0.67 0.99608
Target:  5'- uGGAgagUAGGGAGggggAGGGA-GCGUGCc -3'
miRNA:   3'- cCCUag-GUUUCUCa---UCCCUaCGUACG- -5'
29153 3' -49.7 NC_006146.1 + 158364 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5'
29153 3' -49.7 NC_006146.1 + 155285 0.67 0.994653
Target:  5'- gGGGAggaCAGAGAGggAGGGAagGCAg-- -3'
miRNA:   3'- -CCCUag-GUUUCUCa-UCCCUa-CGUacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.