miRNA display CGI


Results 41 - 60 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 152029 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 145873 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 148951 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 127312 0.66 0.402426
Target:  5'- -cGaCCc--GGCCuCCCGCCCCgcuCCCCg -3'
miRNA:   3'- caC-GGacaCCGG-GGGCGGGGac-GGGG- -5'
29153 5' -67.3 NC_006146.1 + 75298 0.66 0.402426
Target:  5'- uUGCCUagcuUGGCCUUacuuacagGCCCC-GCCCCa -3'
miRNA:   3'- cACGGAc---ACCGGGGg-------CGGGGaCGGGG- -5'
29153 5' -67.3 NC_006146.1 + 80739 0.66 0.402426
Target:  5'- cUGCCgc-GGCCUCUaccucggcuGCCuCCUGCUCCg -3'
miRNA:   3'- cACGGacaCCGGGGG---------CGG-GGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 6433 0.66 0.402426
Target:  5'- -gGCCaUGUGGgCCCUgggGUCCaugggGCCCCa -3'
miRNA:   3'- caCGG-ACACCgGGGG---CGGGga---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 32992 0.66 0.402426
Target:  5'- cUGCCcccGGaaCCCCCGgCCCUGUCCa -3'
miRNA:   3'- cACGGacaCC--GGGGGCgGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 159722 0.67 0.394532
Target:  5'- -gGCUucaugGUGGCgCCCGCCUUUgaagcaauuucgGCCCCu -3'
miRNA:   3'- caCGGa----CACCGgGGGCGGGGA------------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 106339 0.67 0.394532
Target:  5'- -aGC---UGGCCCCCuGCuUCCUGCCCa -3'
miRNA:   3'- caCGgacACCGGGGG-CG-GGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 81091 0.67 0.394532
Target:  5'- --aCCUccacGCCCCCGUCCuCUGCCUCg -3'
miRNA:   3'- cacGGAcac-CGGGGGCGGG-GACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 112654 0.67 0.394532
Target:  5'- -gGCCaccgGGCCCCUuuuauaGCCCUUGUCCa -3'
miRNA:   3'- caCGGaca-CCGGGGG------CGGGGACGGGg -5'
29153 5' -67.3 NC_006146.1 + 46376 0.67 0.394532
Target:  5'- -aGCUcccccaGGCCCCCGUCCCUcGCCa- -3'
miRNA:   3'- caCGGaca---CCGGGGGCGGGGA-CGGgg -5'
29153 5' -67.3 NC_006146.1 + 103815 0.67 0.386739
Target:  5'- uGUGaugGUGGCCgCCGaCCCCUucucgGCCCg -3'
miRNA:   3'- -CACggaCACCGGgGGC-GGGGA-----CGGGg -5'
29153 5' -67.3 NC_006146.1 + 109038 0.67 0.386739
Target:  5'- -cGCCcccGUGGagaCCUCUGCCCCgggaGUCCCg -3'
miRNA:   3'- caCGGa--CACC---GGGGGCGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 92247 0.67 0.386739
Target:  5'- -gGCCUGUGGCUgCUGCuggggggcgggCCCgGCCUg -3'
miRNA:   3'- caCGGACACCGGgGGCG-----------GGGaCGGGg -5'
29153 5' -67.3 NC_006146.1 + 120615 0.67 0.386739
Target:  5'- -cGCCUGacagaucuCCUgCGCCCCUugGCCCCg -3'
miRNA:   3'- caCGGACacc-----GGGgGCGGGGA--CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 32888 0.67 0.382113
Target:  5'- cUGCCUGgcaccaggguccggcUGGgggcgcacCCCCCaCCCCgccgGCCCCc -3'
miRNA:   3'- cACGGAC---------------ACC--------GGGGGcGGGGa---CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 3382 0.67 0.379049
Target:  5'- -gGCCgggGgcgcGGCCCggCGCcagCCCUGCCCCc -3'
miRNA:   3'- caCGGa--Ca---CCGGGg-GCG---GGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 2450 0.67 0.379049
Target:  5'- -gGCCgggGgcgcGGCCCggCGCcagCCCUGCCCCc -3'
miRNA:   3'- caCGGa--Ca---CCGGGg-GCG---GGGACGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.