miRNA display CGI


Results 21 - 40 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29153 5' -67.3 NC_006146.1 + 41771 0.66 0.426698
Target:  5'- -cGCCgGaGGCCCUgCGCCCggGCgCCCg -3'
miRNA:   3'- caCGGaCaCCGGGG-GCGGGgaCG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 80592 0.66 0.426698
Target:  5'- --cCCUuacuaGGCCCCUcCCCuCUGCCCCu -3'
miRNA:   3'- cacGGAca---CCGGGGGcGGG-GACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 43652 0.66 0.426698
Target:  5'- -cGCCUGgggagaggGGCCCggcucgcauUCGCUCCagGCCCUc -3'
miRNA:   3'- caCGGACa-------CCGGG---------GGCGGGGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 103851 0.66 0.426698
Target:  5'- -gGCagagGUGGUCUCCGUCCCgGCCg- -3'
miRNA:   3'- caCGga--CACCGGGGGCGGGGaCGGgg -5'
29153 5' -67.3 NC_006146.1 + 155851 0.66 0.425875
Target:  5'- aGUGCCUccucgcaggcccGgcgGGCCCUggccaggCGCCCCU-CCCUg -3'
miRNA:   3'- -CACGGA------------Ca--CCGGGG-------GCGGGGAcGGGG- -5'
29153 5' -67.3 NC_006146.1 + 66047 0.66 0.418511
Target:  5'- aUGCCUcaGGCaCgCaaaGUUCCUGCCCCg -3'
miRNA:   3'- cACGGAcaCCG-GgGg--CGGGGACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 23403 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 17247 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 14169 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 20325 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 47189 0.66 0.418511
Target:  5'- -aGCCc---GCCgCCGCCCCgagcgccagGCCCCu -3'
miRNA:   3'- caCGGacacCGGgGGCGGGGa--------CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 29559 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 26481 0.66 0.418511
Target:  5'- -aGCCUGccucgaguagGuGCCCUCugaGCCCCcuuUGCCCCc -3'
miRNA:   3'- caCGGACa---------C-CGGGGG---CGGGG---ACGGGG- -5'
29153 5' -67.3 NC_006146.1 + 121155 0.66 0.418511
Target:  5'- -gGCCUG-GGCCgCgCGCCCCUGaaaCg -3'
miRNA:   3'- caCGGACaCCGGgG-GCGGGGACgggG- -5'
29153 5' -67.3 NC_006146.1 + 142110 0.66 0.41042
Target:  5'- cUGCCccaaGUGaGCCCUCgGCCCCaggguaUGCuCCCa -3'
miRNA:   3'- cACGGa---CAC-CGGGGG-CGGGG------ACG-GGG- -5'
29153 5' -67.3 NC_006146.1 + 57384 0.66 0.41042
Target:  5'- -cGCCgguggGcUGGCCCCgCGaCCgUGCCCg -3'
miRNA:   3'- caCGGa----C-ACCGGGG-GCgGGgACGGGg -5'
29153 5' -67.3 NC_006146.1 + 148951 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 152029 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 155107 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5'
29153 5' -67.3 NC_006146.1 + 158186 0.66 0.410419
Target:  5'- -cGCUUGcUGGCCCCaaugGCCgCggGCCUCu -3'
miRNA:   3'- caCGGAC-ACCGGGGg---CGGgGa-CGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.